Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24820 | 5' | -60.4 | NC_005284.1 | + | 45901 | 0.71 | 0.201036 |
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Target: 5'- uUGCCGuGGUCGC-GCGCGAuGCGcagcACGUCg -3' miRNA: 3'- -ACGGC-UCGGCGuCGCGCU-CGC----UGUAG- -5' |
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| 24820 | 5' | -60.4 | NC_005284.1 | + | 46504 | 0.67 | 0.347369 |
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Target: 5'- gGCCGAcGCCGCacgggacggauGGUGCGaAGgGAgGUCc -3' miRNA: 3'- aCGGCU-CGGCG-----------UCGCGC-UCgCUgUAG- -5' |
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| 24820 | 5' | -60.4 | NC_005284.1 | + | 46547 | 1.09 | 0.000256 |
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Target: 5'- uUGCCGAGCCGCAGCGCGAGCGACAUCa -3' miRNA: 3'- -ACGGCUCGGCGUCGCGCUCGCUGUAG- -5' |
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| 24820 | 5' | -60.4 | NC_005284.1 | + | 46575 | 0.69 | 0.279707 |
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Target: 5'- uUGCCGAGCaugGCGGCGC-AGUGgGCAa- -3' miRNA: 3'- -ACGGCUCGg--CGUCGCGcUCGC-UGUag -5' |
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| 24820 | 5' | -60.4 | NC_005284.1 | + | 46682 | 0.66 | 0.407589 |
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Target: 5'- gGCCGAacGCCGC--CGCGAccGCGguuGCAUCg -3' miRNA: 3'- aCGGCU--CGGCGucGCGCU--CGC---UGUAG- -5' |
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| 24820 | 5' | -60.4 | NC_005284.1 | + | 47288 | 0.71 | 0.206333 |
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Target: 5'- gGCCGucGCCGCGugaucaacgcGCGCGAGCuGAacCGUCa -3' miRNA: 3'- aCGGCu-CGGCGU----------CGCGCUCG-CU--GUAG- -5' |
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| 24820 | 5' | -60.4 | NC_005284.1 | + | 49372 | 0.67 | 0.389725 |
|
Target: 5'- aGCUucGCCG-AGCGCGAGCuGGCGc- -3' miRNA: 3'- aCGGcuCGGCgUCGCGCUCG-CUGUag -5' |
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| 24820 | 5' | -60.4 | NC_005284.1 | + | 49719 | 0.66 | 0.41671 |
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Target: 5'- uUGUCGAucggcGUCGCAuuCGCGAGCGugAUg -3' miRNA: 3'- -ACGGCU-----CGGCGUc-GCGCUCGCugUAg -5' |
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| 24820 | 5' | -60.4 | NC_005284.1 | + | 53378 | 0.67 | 0.380988 |
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Target: 5'- cUGCU-AGCUGU-GCGCGgaugccAGCGACGUCg -3' miRNA: 3'- -ACGGcUCGGCGuCGCGC------UCGCUGUAG- -5' |
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| 24820 | 5' | -60.4 | NC_005284.1 | + | 53785 | 0.76 | 0.09173 |
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Target: 5'- aUGCCG-GCUGCuGCgGCGAGCG-CAUCu -3' miRNA: 3'- -ACGGCuCGGCGuCG-CGCUCGCuGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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