miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 24920 0.66 0.444807
Target:  5'- cGCCGGcGCCGaccauCGCGAGauGCGUCg -3'
miRNA:   3'- aCGGCU-CGGCguc--GCGCUCgcUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 23574 0.71 0.21175
Target:  5'- aUGCC-AGCCGgAGCGgguCGAGCGGuuCAUCg -3'
miRNA:   3'- -ACGGcUCGGCgUCGC---GCUCGCU--GUAG- -5'
24820 5' -60.4 NC_005284.1 + 23298 0.71 0.205798
Target:  5'- aUGCCGAGgCGCGcaauGCGCGcuuuuccGGCGGCAc- -3'
miRNA:   3'- -ACGGCUCgGCGU----CGCGC-------UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 22930 0.66 0.435322
Target:  5'- aGUCGGGCUGUucugaucgauuGGCGCGcGCGuugcuCGUCu -3'
miRNA:   3'- aCGGCUCGGCG-----------UCGCGCuCGCu----GUAG- -5'
24820 5' -60.4 NC_005284.1 + 22747 0.69 0.293067
Target:  5'- gGCCGAGCgGCugcggucgaucaaGGgGCGcGCGAuCGUCa -3'
miRNA:   3'- aCGGCUCGgCG-------------UCgCGCuCGCU-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 22130 0.68 0.315926
Target:  5'- cGCCGAugcgggagagGCgGCAGCGUG-GCGcUAUCg -3'
miRNA:   3'- aCGGCU----------CGgCGUCGCGCuCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 21827 0.66 0.41671
Target:  5'- gUGcCCGGcgcuuccagcGCCGcCGGCGUGGGCGAUg-- -3'
miRNA:   3'- -AC-GGCU----------CGGC-GUCGCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 21801 0.67 0.347369
Target:  5'- cGCCc-GCUGCGGaGCGAGUGACcgCc -3'
miRNA:   3'- aCGGcuCGGCGUCgCGCUCGCUGuaG- -5'
24820 5' -60.4 NC_005284.1 + 21733 0.66 0.398593
Target:  5'- aGCagaGAGUCGCAGCcuGCGGGCuGC-UCu -3'
miRNA:   3'- aCGg--CUCGGCGUCG--CGCUCGcUGuAG- -5'
24820 5' -60.4 NC_005284.1 + 21558 0.69 0.293067
Target:  5'- uUGCCGAcgagcagGCCGCGcgggcguucgacGCGC-AGCGGCAUg -3'
miRNA:   3'- -ACGGCU-------CGGCGU------------CGCGcUCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 21408 0.67 0.347369
Target:  5'- aUGgCGAGCCgucgGCAGCGCcGGcCGACGa- -3'
miRNA:   3'- -ACgGCUCGG----CGUCGCGcUC-GCUGUag -5'
24820 5' -60.4 NC_005284.1 + 21321 0.67 0.389725
Target:  5'- cGCCG-GCCGaCGGCGCGuguaagcacuGCGG-AUCg -3'
miRNA:   3'- aCGGCuCGGC-GUCGCGCu---------CGCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 20962 0.67 0.372382
Target:  5'- aGUCGAGgCGCAacucuccugcGUGCGGGCGAUu-- -3'
miRNA:   3'- aCGGCUCgGCGU----------CGCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 20815 0.7 0.249374
Target:  5'- cUGUCGAGCagccCGCAGCagcgccggccgacgaGCGGGCGGCGc- -3'
miRNA:   3'- -ACGGCUCG----GCGUCG---------------CGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 20737 0.68 0.315926
Target:  5'- -uCCGAGCCGCGaaGCcAGCGACgAUCc -3'
miRNA:   3'- acGGCUCGGCGUcgCGcUCGCUG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 19198 0.69 0.259605
Target:  5'- cUGCCuGAGucuCCGCAGCGCGA-CGAgGUa -3'
miRNA:   3'- -ACGG-CUC---GGCGUCGCGCUcGCUgUAg -5'
24820 5' -60.4 NC_005284.1 + 17878 0.69 0.266172
Target:  5'- gGCCG-GCCGcCGGaucgGCGGGCG-CAUCc -3'
miRNA:   3'- aCGGCuCGGC-GUCg---CGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16881 0.66 0.435322
Target:  5'- gUGCUG-GCCGguGCGUucgacggcaaGA-CGACGUCg -3'
miRNA:   3'- -ACGGCuCGGCguCGCG----------CUcGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16670 0.68 0.323581
Target:  5'- -uCCG-GCCGUcgAGCGUGAGgcCGGCGUCg -3'
miRNA:   3'- acGGCuCGGCG--UCGCGCUC--GCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16175 0.7 0.246869
Target:  5'- gGCUcGGCgCGUcgauGGCGCuGGGCGGCAUCg -3'
miRNA:   3'- aCGGcUCG-GCG----UCGCG-CUCGCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.