miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 16104 0.7 0.246869
Target:  5'- cGCCGcacucguuGCCGuUGGCGCGguGGCGACGUUc -3'
miRNA:   3'- aCGGCu-------CGGC-GUCGCGC--UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 15286 0.68 0.323581
Target:  5'- aGCCGAccgacgagGaCCGCacgaugugcgGGCGC-AGCGGCAUCg -3'
miRNA:   3'- aCGGCU--------C-GGCG----------UCGCGcUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14530 0.83 0.02782
Target:  5'- cGCCGAcGCUGCGG-GUGGGCGACAUCa -3'
miRNA:   3'- aCGGCU-CGGCGUCgCGCUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14479 0.7 0.240698
Target:  5'- gGCCGAuacagGCCGCgGGCuuCGAGCaGACAUCc -3'
miRNA:   3'- aCGGCU-----CGGCG-UCGc-GCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14049 0.67 0.380988
Target:  5'- aGCgGGGCgGCAG-GCuGGCGuCAUCg -3'
miRNA:   3'- aCGgCUCGgCGUCgCGcUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 12040 0.66 0.435322
Target:  5'- cGCCGAccucgcGCgGUuuucGGCGCGugcGGCGAUGUCu -3'
miRNA:   3'- aCGGCU------CGgCG----UCGCGC---UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 11968 0.69 0.293784
Target:  5'- aUGCCGAGgUGCAcucGUGuCGuucGCGGCGUCg -3'
miRNA:   3'- -ACGGCUCgGCGU---CGC-GCu--CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 11804 0.68 0.323581
Target:  5'- gGCCGAggcggagcagGUCGC-GCGCGAGCGcgGCuAUCu -3'
miRNA:   3'- aCGGCU----------CGGCGuCGCGCUCGC--UG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 11609 0.77 0.075215
Target:  5'- gGCCGAGCgucagcgugacgUGCAGCGCGAacucgggGCGAUGUCg -3'
miRNA:   3'- aCGGCUCG------------GCGUCGCGCU-------CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 10999 0.73 0.141941
Target:  5'- uUGCCGAcaaggaugcgaaaGCCGCAGCGgGGGCaagaaccaACAUCg -3'
miRNA:   3'- -ACGGCU-------------CGGCGUCGCgCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 10005 0.67 0.389725
Target:  5'- gGCCGAGacggaCCGCGGCcuugcgcaaGcCGAGCGugAUg -3'
miRNA:   3'- aCGGCUC-----GGCGUCG---------C-GCUCGCugUAg -5'
24820 5' -60.4 NC_005284.1 + 9864 0.74 0.127682
Target:  5'- -aCCGAGgCGCGGUGCGAGUGAU-UCg -3'
miRNA:   3'- acGGCUCgGCGUCGCGCUCGCUGuAG- -5'
24820 5' -60.4 NC_005284.1 + 9655 0.76 0.082043
Target:  5'- gGCCGAGCuCGCGGgcaUGCGAGCGAUg-- -3'
miRNA:   3'- aCGGCUCG-GCGUC---GCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 9459 0.66 0.425026
Target:  5'- uUGCCGuGuacuuugggcaauCCGCAGuCGCG-GCGACGc- -3'
miRNA:   3'- -ACGGCuC-------------GGCGUC-GCGCuCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 9232 0.67 0.36391
Target:  5'- cGUCGAGgCGCugacGCGCGcggcgGGCGGCAc- -3'
miRNA:   3'- aCGGCUCgGCGu---CGCGC-----UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 9216 0.73 0.138527
Target:  5'- cGUCGAuaGCCGaguGCGCGGGCGACGc- -3'
miRNA:   3'- aCGGCU--CGGCgu-CGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 9134 0.68 0.322809
Target:  5'- uUGCCGGGUguCGCGGaugcuauCGCGcGCGGCAUg -3'
miRNA:   3'- -ACGGCUCG--GCGUC-------GCGCuCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 8759 0.7 0.240698
Target:  5'- aGCC--GCCGCAGCgGCGuucGGCGuGCAUCa -3'
miRNA:   3'- aCGGcuCGGCGUCG-CGC---UCGC-UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 8272 0.7 0.222953
Target:  5'- gGCCGAGCU---GUGCGAGCaGAUGUCg -3'
miRNA:   3'- aCGGCUCGGcguCGCGCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 7983 0.68 0.331373
Target:  5'- -uCCGAGaaguuCGCGcGCGCGAGUGACGa- -3'
miRNA:   3'- acGGCUCg----GCGU-CGCGCUCGCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.