miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 9134 0.68 0.322809
Target:  5'- uUGCCGGGUguCGCGGaugcuauCGCGcGCGGCAUg -3'
miRNA:   3'- -ACGGCUCG--GCGUC-------GCGCuCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 3309 0.68 0.308408
Target:  5'- cUGUugCGAGCCGaUAGUGCaggccGAGCGGCGUUc -3'
miRNA:   3'- -ACG--GCUCGGC-GUCGCG-----CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 11968 0.69 0.293784
Target:  5'- aUGCCGAGgUGCAcucGUGuCGuucGCGGCGUCg -3'
miRNA:   3'- -ACGGCUCgGCGU---CGC-GCu--CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 22747 0.69 0.293067
Target:  5'- gGCCGAGCgGCugcggucgaucaaGGgGCGcGCGAuCGUCa -3'
miRNA:   3'- aCGGCUCGgCG-------------UCgCGCuCGCU-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 21558 0.69 0.293067
Target:  5'- uUGCCGAcgagcagGCCGCGcgggcguucgacGCGC-AGCGGCAUg -3'
miRNA:   3'- -ACGGCU-------CGGCGU------------CGCGcUCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 46575 0.69 0.279707
Target:  5'- uUGCCGAGCaugGCGGCGC-AGUGgGCAa- -3'
miRNA:   3'- -ACGGCUCGg--CGUCGCGcUCGC-UGUag -5'
24820 5' -60.4 NC_005284.1 + 17878 0.69 0.266172
Target:  5'- gGCCG-GCCGcCGGaucgGCGGGCG-CAUCc -3'
miRNA:   3'- aCGGCuCGGC-GUCg---CGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 41610 0.7 0.246869
Target:  5'- gGCCGcGCCG-AGUGCGAGCuccgacacGCAUCg -3'
miRNA:   3'- aCGGCuCGGCgUCGCGCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16175 0.7 0.246869
Target:  5'- gGCUcGGCgCGUcgauGGCGCuGGGCGGCAUCg -3'
miRNA:   3'- aCGGcUCG-GCG----UCGCG-CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16104 0.7 0.246869
Target:  5'- cGCCGcacucguuGCCGuUGGCGCGguGGCGACGUUc -3'
miRNA:   3'- aCGGCu-------CGGC-GUCGCGC--UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14479 0.7 0.240698
Target:  5'- gGCCGAuacagGCCGCgGGCuuCGAGCaGACAUCc -3'
miRNA:   3'- aCGGCU-----CGGCG-UCGc-GCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 37868 0.67 0.389725
Target:  5'- aGCuCGAuCCGaugcgAGCGCucauaGAGCGACGUCg -3'
miRNA:   3'- aCG-GCUcGGCg----UCGCG-----CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 5705 0.67 0.389725
Target:  5'- aUGCCGAGuuGCuuacCGCGgucAGUGACAc- -3'
miRNA:   3'- -ACGGCUCggCGuc--GCGC---UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 21321 0.67 0.389725
Target:  5'- cGCCG-GCCGaCGGCGCGuguaagcacuGCGG-AUCg -3'
miRNA:   3'- aCGGCuCGGC-GUCGCGCu---------CGCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 36304 0.67 0.389725
Target:  5'- cGCCGAGCgCGUucucGGCGCGcacccgcGCGAgGUa -3'
miRNA:   3'- aCGGCUCG-GCG----UCGCGCu------CGCUgUAg -5'
24820 5' -60.4 NC_005284.1 + 7171 0.66 0.407589
Target:  5'- cGCa-AGCUuCAGCGCGuGCGACAc- -3'
miRNA:   3'- aCGgcUCGGcGUCGCGCuCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 36892 0.66 0.407589
Target:  5'- cGCC-AGCCGCuGCGCGGauGCGcCcgCc -3'
miRNA:   3'- aCGGcUCGGCGuCGCGCU--CGCuGuaG- -5'
24820 5' -60.4 NC_005284.1 + 46682 0.66 0.407589
Target:  5'- gGCCGAacGCCGC--CGCGAccGCGguuGCAUCg -3'
miRNA:   3'- aCGGCU--CGGCGucGCGCU--CGC---UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 49719 0.66 0.41671
Target:  5'- uUGUCGAucggcGUCGCAuuCGCGAGCGugAUg -3'
miRNA:   3'- -ACGGCU-----CGGCGUc-GCGCUCGCugUAg -5'
24820 5' -60.4 NC_005284.1 + 46547 1.09 0.000256
Target:  5'- uUGCCGAGCCGCAGCGCGAGCGACAUCa -3'
miRNA:   3'- -ACGGCUCGGCGUCGCGCUCGCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.