miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 12040 0.66 0.435322
Target:  5'- cGCCGAccucgcGCgGUuuucGGCGCGugcGGCGAUGUCu -3'
miRNA:   3'- aCGGCU------CGgCG----UCGCGC---UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 956 0.66 0.444807
Target:  5'- gUGCCGAGguguaCGcCGGCGCGA-CGACu-- -3'
miRNA:   3'- -ACGGCUCg----GC-GUCGCGCUcGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 9655 0.76 0.082043
Target:  5'- gGCCGAGCuCGCGGgcaUGCGAGCGAUg-- -3'
miRNA:   3'- aCGGCUCG-GCGUC---GCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 45413 0.72 0.185849
Target:  5'- gUGUCGcAGUCGCGGCcgGCGAcgauauucGCGGCGUCg -3'
miRNA:   3'- -ACGGC-UCGGCGUCG--CGCU--------CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 37446 0.67 0.354745
Target:  5'- aGCCG-GCCGCgaggaacaucgucGGCGCGAG-GAUcagaAUCa -3'
miRNA:   3'- aCGGCuCGGCG-------------UCGCGCUCgCUG----UAG- -5'
24820 5' -60.4 NC_005284.1 + 10999 0.73 0.141941
Target:  5'- uUGCCGAcaaggaugcgaaaGCCGCAGCGgGGGCaagaaccaACAUCg -3'
miRNA:   3'- -ACGGCU-------------CGGCGUCGCgCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 15286 0.68 0.323581
Target:  5'- aGCCGAccgacgagGaCCGCacgaugugcgGGCGC-AGCGGCAUCg -3'
miRNA:   3'- aCGGCU--------C-GGCG----------UCGCGcUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 22930 0.66 0.435322
Target:  5'- aGUCGGGCUGUucugaucgauuGGCGCGcGCGuugcuCGUCu -3'
miRNA:   3'- aCGGCUCGGCG-----------UCGCGCuCGCu----GUAG- -5'
24820 5' -60.4 NC_005284.1 + 38534 0.66 0.43438
Target:  5'- aGCCGAuagugauGCCGUAG-GCGAG-GAuCAUCc -3'
miRNA:   3'- aCGGCU-------CGGCGUCgCGCUCgCU-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 11804 0.68 0.323581
Target:  5'- gGCCGAggcggagcagGUCGC-GCGCGAGCGcgGCuAUCu -3'
miRNA:   3'- aCGGCU----------CGGCGuCGCGCUCGC--UG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 16670 0.68 0.323581
Target:  5'- -uCCG-GCCGUcgAGCGUGAGgcCGGCGUCg -3'
miRNA:   3'- acGGCuCGGCG--UCGCGCUC--GCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 7983 0.68 0.331373
Target:  5'- -uCCGAGaaguuCGCGcGCGCGAGUGACGa- -3'
miRNA:   3'- acGGCUCg----GCGU-CGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 38976 0.67 0.347369
Target:  5'- aUGCUGAuCCGCGggcuGCGCGcuGGCGACGc- -3'
miRNA:   3'- -ACGGCUcGGCGU----CGCGC--UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 46504 0.67 0.347369
Target:  5'- gGCCGAcGCCGCacgggacggauGGUGCGaAGgGAgGUCc -3'
miRNA:   3'- aCGGCU-CGGCG-----------UCGCGC-UCgCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 3309 0.68 0.308408
Target:  5'- cUGUugCGAGCCGaUAGUGCaggccGAGCGGCGUUc -3'
miRNA:   3'- -ACG--GCUCGGC-GUCGCG-----CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 9134 0.68 0.322809
Target:  5'- uUGCCGGGUguCGCGGaugcuauCGCGcGCGGCAUg -3'
miRNA:   3'- -ACGGCUCG--GCGUC-------GCGCuCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 16104 0.7 0.246869
Target:  5'- cGCCGcacucguuGCCGuUGGCGCGguGGCGACGUUc -3'
miRNA:   3'- aCGGCu-------CGGC-GUCGCGC--UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 14479 0.7 0.240698
Target:  5'- gGCCGAuacagGCCGCgGGCuuCGAGCaGACAUCc -3'
miRNA:   3'- aCGGCU-----CGGCG-UCGc-GCUCG-CUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 8759 0.7 0.240698
Target:  5'- aGCC--GCCGCAGCgGCGuucGGCGuGCAUCa -3'
miRNA:   3'- aCGGcuCGGCGUCG-CGC---UCGC-UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 8272 0.7 0.222953
Target:  5'- gGCCGAGCU---GUGCGAGCaGAUGUCg -3'
miRNA:   3'- aCGGCUCGGcguCGCGCUCG-CUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.