miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 10999 0.73 0.141941
Target:  5'- uUGCCGAcaaggaugcgaaaGCCGCAGCGgGGGCaagaaccaACAUCg -3'
miRNA:   3'- -ACGGCU-------------CGGCGUCGCgCUCGc-------UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 4636 0.74 0.134821
Target:  5'- gGUCG-GCaGCGGCGUGAGCGGCAg- -3'
miRNA:   3'- aCGGCuCGgCGUCGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 9134 0.68 0.322809
Target:  5'- uUGCCGGGUguCGCGGaugcuauCGCGcGCGGCAUg -3'
miRNA:   3'- -ACGGCUCG--GCGUC-------GCGCuCGCUGUAg -5'
24820 5' -60.4 NC_005284.1 + 15286 0.68 0.323581
Target:  5'- aGCCGAccgacgagGaCCGCacgaugugcgGGCGC-AGCGGCAUCg -3'
miRNA:   3'- aCGGCU--------C-GGCG----------UCGCGcUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 11804 0.68 0.323581
Target:  5'- gGCCGAggcggagcagGUCGC-GCGCGAGCGcgGCuAUCu -3'
miRNA:   3'- aCGGCU----------CGGCGuCGCGCUCGC--UG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 9459 0.66 0.425026
Target:  5'- uUGCCGuGuacuuugggcaauCCGCAGuCGCG-GCGACGc- -3'
miRNA:   3'- -ACGGCuC-------------GGCGUC-GCGCuCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 39817 0.66 0.420394
Target:  5'- -aCCGGGCCGCgugccgcauugcaugGGCGCGGcCGAUGUUc -3'
miRNA:   3'- acGGCUCGGCG---------------UCGCGCUcGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 21827 0.66 0.41671
Target:  5'- gUGcCCGGcgcuuccagcGCCGcCGGCGUGGGCGAUg-- -3'
miRNA:   3'- -AC-GGCU----------CGGC-GUCGCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 455 0.66 0.407589
Target:  5'- cGgCGAGCCgGCAGCGCcuGGuCGGCGc- -3'
miRNA:   3'- aCgGCUCGG-CGUCGCGc-UC-GCUGUag -5'
24820 5' -60.4 NC_005284.1 + 1230 0.66 0.404877
Target:  5'- cGCCGgcAGCCGCucauGUucaucaucacgacuGCGGGCGcgaACAUCg -3'
miRNA:   3'- aCGGC--UCGGCGu---CG--------------CGCUCGC---UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 21733 0.66 0.398593
Target:  5'- aGCagaGAGUCGCAGCcuGCGGGCuGC-UCu -3'
miRNA:   3'- aCGg--CUCGGCGUCG--CGCUCGcUGuAG- -5'
24820 5' -60.4 NC_005284.1 + 10005 0.67 0.389725
Target:  5'- gGCCGAGacggaCCGCGGCcuugcgcaaGcCGAGCGugAUg -3'
miRNA:   3'- aCGGCUC-----GGCGUCG---------C-GCUCGCugUAg -5'
24820 5' -60.4 NC_005284.1 + 49372 0.67 0.389725
Target:  5'- aGCUucGCCG-AGCGCGAGCuGGCGc- -3'
miRNA:   3'- aCGGcuCGGCgUCGCGCUCG-CUGUag -5'
24820 5' -60.4 NC_005284.1 + 31474 0.67 0.380988
Target:  5'- cGCCGuGCCGCcggaaaAGCGCGcauuGCGcGCcUCg -3'
miRNA:   3'- aCGGCuCGGCG------UCGCGCu---CGC-UGuAG- -5'
24820 5' -60.4 NC_005284.1 + 53378 0.67 0.380988
Target:  5'- cUGCU-AGCUGU-GCGCGgaugccAGCGACGUCg -3'
miRNA:   3'- -ACGGcUCGGCGuCGCGC------UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 37446 0.67 0.354745
Target:  5'- aGCCG-GCCGCgaggaacaucgucGGCGCGAG-GAUcagaAUCa -3'
miRNA:   3'- aCGGCuCGGCG-------------UCGCGCUCgCUG----UAG- -5'
24820 5' -60.4 NC_005284.1 + 46504 0.67 0.347369
Target:  5'- gGCCGAcGCCGCacgggacggauGGUGCGaAGgGAgGUCc -3'
miRNA:   3'- aCGGCU-CGGCG-----------UCGCGC-UCgCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 38976 0.67 0.347369
Target:  5'- aUGCUGAuCCGCGggcuGCGCGcuGGCGACGc- -3'
miRNA:   3'- -ACGGCUcGGCGU----CGCGC--UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 7983 0.68 0.331373
Target:  5'- -uCCGAGaaguuCGCGcGCGCGAGUGACGa- -3'
miRNA:   3'- acGGCUCg----GCGU-CGCGCUCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 16670 0.68 0.323581
Target:  5'- -uCCG-GCCGUcgAGCGUGAGgcCGGCGUCg -3'
miRNA:   3'- acGGCuCGGCG--UCGCGCUC--GCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.