Results 81 - 90 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 15286 | 0.68 | 0.323581 |
Target: 5'- aGCCGAccgacgagGaCCGCacgaugugcgGGCGC-AGCGGCAUCg -3' miRNA: 3'- aCGGCU--------C-GGCG----------UCGCGcUCGCUGUAG- -5' |
|||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 11804 | 0.68 | 0.323581 |
Target: 5'- gGCCGAggcggagcagGUCGC-GCGCGAGCGcgGCuAUCu -3' miRNA: 3'- aCGGCU----------CGGCGuCGCGCUCGC--UG-UAG- -5' |
|||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 16670 | 0.68 | 0.323581 |
Target: 5'- -uCCG-GCCGUcgAGCGUGAGgcCGGCGUCg -3' miRNA: 3'- acGGCuCGGCG--UCGCGCUC--GCUGUAG- -5' |
|||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 7983 | 0.68 | 0.331373 |
Target: 5'- -uCCGAGaaguuCGCGcGCGCGAGUGACGa- -3' miRNA: 3'- acGGCUCg----GCGU-CGCGCUCGCUGUag -5' |
|||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 38976 | 0.67 | 0.347369 |
Target: 5'- aUGCUGAuCCGCGggcuGCGCGcuGGCGACGc- -3' miRNA: 3'- -ACGGCUcGGCGU----CGCGC--UCGCUGUag -5' |
|||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 46504 | 0.67 | 0.347369 |
Target: 5'- gGCCGAcGCCGCacgggacggauGGUGCGaAGgGAgGUCc -3' miRNA: 3'- aCGGCU-CGGCG-----------UCGCGC-UCgCUgUAG- -5' |
|||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 37446 | 0.67 | 0.354745 |
Target: 5'- aGCCG-GCCGCgaggaacaucgucGGCGCGAG-GAUcagaAUCa -3' miRNA: 3'- aCGGCuCGGCG-------------UCGCGCUCgCUG----UAG- -5' |
|||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 9232 | 0.67 | 0.36391 |
Target: 5'- cGUCGAGgCGCugacGCGCGcggcgGGCGGCAc- -3' miRNA: 3'- aCGGCUCgGCGu---CGCGC-----UCGCUGUag -5' |
|||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 41373 | 0.67 | 0.372382 |
Target: 5'- cGCCGAGacacgcCCGCGGUcacgauguuucGCGAGUGGCu-- -3' miRNA: 3'- aCGGCUC------GGCGUCG-----------CGCUCGCUGuag -5' |
|||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 38534 | 0.66 | 0.43438 |
Target: 5'- aGCCGAuagugauGCCGUAG-GCGAG-GAuCAUCc -3' miRNA: 3'- aCGGCU-------CGGCGUCgCGCUCgCU-GUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home