miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 3' -59.4 NC_005284.1 + 44719 1.12 0.00027
Target:  5'- cGGUCGCCGCGCGUUCCGCUCGCUCACg -3'
miRNA:   3'- -CCAGCGGCGCGCAAGGCGAGCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 23172 0.83 0.035322
Target:  5'- cGUCGCgGCGCGUUCCGCUCGUg--- -3'
miRNA:   3'- cCAGCGgCGCGCAAGGCGAGCGagug -5'
24823 3' -59.4 NC_005284.1 + 43531 0.74 0.166317
Target:  5'- -uUCGCCGCGCGagCCGCU-GC-CGCg -3'
miRNA:   3'- ccAGCGGCGCGCaaGGCGAgCGaGUG- -5'
24823 3' -59.4 NC_005284.1 + 46897 0.72 0.238751
Target:  5'- cGGUCGCCGa-CG-UCgGCUCGCgCACu -3'
miRNA:   3'- -CCAGCGGCgcGCaAGgCGAGCGaGUG- -5'
24823 3' -59.4 NC_005284.1 + 8598 0.72 0.238751
Target:  5'- gGGagGCUGCGCGUUCgGCgaGUUCGCc -3'
miRNA:   3'- -CCagCGGCGCGCAAGgCGagCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 36658 0.71 0.251028
Target:  5'- cGUCGUCGuCGCuUUCCuGCaCGCUCACa -3'
miRNA:   3'- cCAGCGGC-GCGcAAGG-CGaGCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 8110 0.71 0.277138
Target:  5'- cGGUCGCgGCgGCGUUCgGCccCGUgCACa -3'
miRNA:   3'- -CCAGCGgCG-CGCAAGgCGa-GCGaGUG- -5'
24823 3' -59.4 NC_005284.1 + 23909 0.7 0.290987
Target:  5'- cGGUCGCUGCGCGaccagUgCGCU-GC-CGCa -3'
miRNA:   3'- -CCAGCGGCGCGCa----AgGCGAgCGaGUG- -5'
24823 3' -59.4 NC_005284.1 + 32884 0.7 0.304639
Target:  5'- cGUCGCCGgcgacgccgaaaaCGCGUUCCGCaacCGCU-GCg -3'
miRNA:   3'- cCAGCGGC-------------GCGCAAGGCGa--GCGAgUG- -5'
24823 3' -59.4 NC_005284.1 + 16200 0.7 0.310532
Target:  5'- -cUCGCCGCGUGcgcucggccgaacggCCGuCUCGCUCGg -3'
miRNA:   3'- ccAGCGGCGCGCaa-------------GGC-GAGCGAGUg -5'
24823 3' -59.4 NC_005284.1 + 44675 0.7 0.312765
Target:  5'- cGUCGCCGCGC-UUUCGgUCGC-CGu -3'
miRNA:   3'- cCAGCGGCGCGcAAGGCgAGCGaGUg -5'
24823 3' -59.4 NC_005284.1 + 4688 0.7 0.31576
Target:  5'- -aUCGCCGCGUuacguucucgaugcuGUUCgGCU-GCUCGCu -3'
miRNA:   3'- ccAGCGGCGCG---------------CAAGgCGAgCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 37801 0.69 0.335756
Target:  5'- cGUCGCCguguGCGCGUUCgGCgugaUGCggcgCACg -3'
miRNA:   3'- cCAGCGG----CGCGCAAGgCGa---GCGa---GUG- -5'
24823 3' -59.4 NC_005284.1 + 12019 0.69 0.351757
Target:  5'- aGGUUGuuGUGCGUggUCGCaaUCGCcCACg -3'
miRNA:   3'- -CCAGCggCGCGCAa-GGCG--AGCGaGUG- -5'
24823 3' -59.4 NC_005284.1 + 9638 0.69 0.355022
Target:  5'- cGUCGCCGUGCGUcgaCCacgccuugcccaucaGCUCGacgaUCGCa -3'
miRNA:   3'- cCAGCGGCGCGCAa--GG---------------CGAGCg---AGUG- -5'
24823 3' -59.4 NC_005284.1 + 28458 0.69 0.355022
Target:  5'- --gUGCCGCGCuGaagaauguccaugcuUUCCGCUCGCaCGCg -3'
miRNA:   3'- ccaGCGGCGCG-C---------------AAGGCGAGCGaGUG- -5'
24823 3' -59.4 NC_005284.1 + 12362 0.69 0.368291
Target:  5'- -uUCGCCGCGgGUgg-GCUCGUUgGCg -3'
miRNA:   3'- ccAGCGGCGCgCAaggCGAGCGAgUG- -5'
24823 3' -59.4 NC_005284.1 + 23443 0.68 0.376756
Target:  5'- --cCGacagCGCGUGUUCUGCgcgUCGCUCGCc -3'
miRNA:   3'- ccaGCg---GCGCGCAAGGCG---AGCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 41814 0.68 0.385351
Target:  5'- uGUCGCCGCcacUUCCGCUgggugGCUCGCc -3'
miRNA:   3'- cCAGCGGCGcgcAAGGCGAg----CGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 3532 0.68 0.394075
Target:  5'- -uUCuUCGCGCGUg--GCUCGCUCGCc -3'
miRNA:   3'- ccAGcGGCGCGCAaggCGAGCGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.