miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24824 5' -54.7 NC_005284.1 + 24806 0.66 0.722951
Target:  5'- -cAGUCGaGAGCCAgacACUG-GUGCAUCGg -3'
miRNA:   3'- guUCGGC-CUUGGU---UGGCuCGCGUAGU- -5'
24824 5' -54.7 NC_005284.1 + 43819 0.66 0.722951
Target:  5'- uUAAG-CGGGACC-GCCGuGCGCcgAUCGa -3'
miRNA:   3'- -GUUCgGCCUUGGuUGGCuCGCG--UAGU- -5'
24824 5' -54.7 NC_005284.1 + 37428 0.66 0.719721
Target:  5'- -cGGCCGGGacguuaucgcaGCCGGCCGcgaggaacaucgucGGCGCGaggaUCAg -3'
miRNA:   3'- guUCGGCCU-----------UGGUUGGC--------------UCGCGU----AGU- -5'
24824 5' -54.7 NC_005284.1 + 47708 0.66 0.705637
Target:  5'- cCAAGUCGGcaAGCCGAUCGgcgucggugaacgucGGCGCGUa- -3'
miRNA:   3'- -GUUCGGCC--UUGGUUGGC---------------UCGCGUAgu -5'
24824 5' -54.7 NC_005284.1 + 27843 0.66 0.701277
Target:  5'- --cGCUGGGagucGCCAgacgacgcGCCGcccGGCGCAUCGc -3'
miRNA:   3'- guuCGGCCU----UGGU--------UGGC---UCGCGUAGU- -5'
24824 5' -54.7 NC_005284.1 + 46548 0.67 0.690331
Target:  5'- --uGCC-GAGCCGcaGCgCGAGCGaCAUCAg -3'
miRNA:   3'- guuCGGcCUUGGU--UG-GCUCGC-GUAGU- -5'
24824 5' -54.7 NC_005284.1 + 12553 0.67 0.690331
Target:  5'- gCAGGgCGGAACCuuguGgaGAGCGCAa-- -3'
miRNA:   3'- -GUUCgGCCUUGGu---UggCUCGCGUagu -5'
24824 5' -54.7 NC_005284.1 + 695 0.67 0.690331
Target:  5'- uCGAuCCGGAGgCGGCCGAGCGaaagcUCGc -3'
miRNA:   3'- -GUUcGGCCUUgGUUGGCUCGCgu---AGU- -5'
24824 5' -54.7 NC_005284.1 + 14353 0.67 0.690331
Target:  5'- uCGAGCCGGGucgACUGAUCGAGCuuuUCGa -3'
miRNA:   3'- -GUUCGGCCU---UGGUUGGCUCGcguAGU- -5'
24824 5' -54.7 NC_005284.1 + 27375 0.67 0.679328
Target:  5'- cCAAGCCGGAGCUcGCUGAuaccCGgAUCu -3'
miRNA:   3'- -GUUCGGCCUUGGuUGGCUc---GCgUAGu -5'
24824 5' -54.7 NC_005284.1 + 42814 0.67 0.679328
Target:  5'- --cGCCGcGAA-CGACaCGAGUGCAUCc -3'
miRNA:   3'- guuCGGC-CUUgGUUG-GCUCGCGUAGu -5'
24824 5' -54.7 NC_005284.1 + 9345 0.67 0.678225
Target:  5'- gCGAGUCGGAucaagcgACgGGCgCGAGCGCGa-- -3'
miRNA:   3'- -GUUCGGCCU-------UGgUUG-GCUCGCGUagu -5'
24824 5' -54.7 NC_005284.1 + 11842 0.67 0.657196
Target:  5'- uCGAGCagCGGcucgcguugcaGGCCGACUG-GCGCGUCGg -3'
miRNA:   3'- -GUUCG--GCC-----------UUGGUUGGCuCGCGUAGU- -5'
24824 5' -54.7 NC_005284.1 + 9512 0.67 0.646088
Target:  5'- uGGGUCGGcGCCcGgCGAGCGCucGUCGa -3'
miRNA:   3'- gUUCGGCCuUGGuUgGCUCGCG--UAGU- -5'
24824 5' -54.7 NC_005284.1 + 18837 0.68 0.623846
Target:  5'- gGGGCCGGGcgugcaggGgCAGCCGAGCacGgAUCAa -3'
miRNA:   3'- gUUCGGCCU--------UgGUUGGCUCG--CgUAGU- -5'
24824 5' -54.7 NC_005284.1 + 38879 0.68 0.61273
Target:  5'- aAAGCCgGGAAUCAgcACCGAuaGCGCGcgCAc -3'
miRNA:   3'- gUUCGG-CCUUGGU--UGGCU--CGCGUa-GU- -5'
24824 5' -54.7 NC_005284.1 + 22547 0.68 0.601632
Target:  5'- cCGGGCCuGAACCuGCU--GCGCAUCGa -3'
miRNA:   3'- -GUUCGGcCUUGGuUGGcuCGCGUAGU- -5'
24824 5' -54.7 NC_005284.1 + 38584 0.68 0.601632
Target:  5'- -cGGCCGu--UCGGCCGAGCGCAcgCGg -3'
miRNA:   3'- guUCGGCcuuGGUUGGCUCGCGUa-GU- -5'
24824 5' -54.7 NC_005284.1 + 26235 0.68 0.601632
Target:  5'- uGAGUCGGGuCUcuCCGAGCGCGa-- -3'
miRNA:   3'- gUUCGGCCUuGGuuGGCUCGCGUagu -5'
24824 5' -54.7 NC_005284.1 + 16085 0.68 0.579525
Target:  5'- uGAGCCGGcAGCCGauacguccAUCGAGCcuuucgccGCGUCGa -3'
miRNA:   3'- gUUCGGCC-UUGGU--------UGGCUCG--------CGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.