miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24825 5' -54.6 NC_005284.1 + 21588 0.66 0.763377
Target:  5'- aCGCGcAGCGGCAuGCCGaagCGUugGGCa -3'
miRNA:   3'- aGCGCuUUGUCGU-CGGUcaaGCG--CCG- -5'
24825 5' -54.6 NC_005284.1 + 18001 0.66 0.763377
Target:  5'- gCGCGc-GCAGUcaAGUCGG-UCGaCGGCg -3'
miRNA:   3'- aGCGCuuUGUCG--UCGGUCaAGC-GCCG- -5'
24825 5' -54.6 NC_005284.1 + 40379 0.66 0.763377
Target:  5'- -aGCGguGCAGCgAGCaAGgcUGCGGUa -3'
miRNA:   3'- agCGCuuUGUCG-UCGgUCaaGCGCCG- -5'
24825 5' -54.6 NC_005284.1 + 36113 0.66 0.763377
Target:  5'- gUCGCGAuucGGCGuGCGGCUGuaccagaucuccGUUCGCuGCg -3'
miRNA:   3'- -AGCGCU---UUGU-CGUCGGU------------CAAGCGcCG- -5'
24825 5' -54.6 NC_005284.1 + 21727 0.66 0.762348
Target:  5'- aUGCGuguacgaGAACGGCGauggugugugccGCCAGUgCGCGGa -3'
miRNA:   3'- aGCGC-------UUUGUCGU------------CGGUCAaGCGCCg -5'
24825 5' -54.6 NC_005284.1 + 22261 0.66 0.760288
Target:  5'- cCGCGAGGguGgcgagccugacgaaCAGCCAGcgCGaGGCa -3'
miRNA:   3'- aGCGCUUUguC--------------GUCGGUCaaGCgCCG- -5'
24825 5' -54.6 NC_005284.1 + 12245 0.66 0.753035
Target:  5'- aUCcCGgcGCAGCuuucgaacGGCgAGUUCGUGGUn -3'
miRNA:   3'- -AGcGCuuUGUCG--------UCGgUCAAGCGCCG- -5'
24825 5' -54.6 NC_005284.1 + 8744 0.66 0.746769
Target:  5'- cCGCGAAuacgcacaagccgccGCAGCGGC--GUUCgGCGuGCa -3'
miRNA:   3'- aGCGCUU---------------UGUCGUCGguCAAG-CGC-CG- -5'
24825 5' -54.6 NC_005284.1 + 18103 0.66 0.742568
Target:  5'- cUCGCGgcGCAGCAGUaucgcgUUGUGaGCg -3'
miRNA:   3'- -AGCGCuuUGUCGUCGguca--AGCGC-CG- -5'
24825 5' -54.6 NC_005284.1 + 23355 0.66 0.742568
Target:  5'- gCGCGccGCAGCGGCgCAcgUCGCccgcgaacuGGCg -3'
miRNA:   3'- aGCGCuuUGUCGUCG-GUcaAGCG---------CCG- -5'
24825 5' -54.6 NC_005284.1 + 48466 0.66 0.740461
Target:  5'- uUCGcCGGAuGCAGCAGUCGGgcuggcuaauacUCGUGaGCg -3'
miRNA:   3'- -AGC-GCUU-UGUCGUCGGUCa-----------AGCGC-CG- -5'
24825 5' -54.6 NC_005284.1 + 53551 0.66 0.731989
Target:  5'- gUCGUGAugaugaacaugAGCGGCuGCCGGcgCGCGc- -3'
miRNA:   3'- -AGCGCU-----------UUGUCGuCGGUCaaGCGCcg -5'
24825 5' -54.6 NC_005284.1 + 251 0.66 0.731989
Target:  5'- -gGCu-GACAGaGGCCGcugUCGCGGCg -3'
miRNA:   3'- agCGcuUUGUCgUCGGUca-AGCGCCG- -5'
24825 5' -54.6 NC_005284.1 + 48968 0.66 0.731989
Target:  5'- aUCGaCGAAGCGGU-GCUg---CGCGGCu -3'
miRNA:   3'- -AGC-GCUUUGUCGuCGGucaaGCGCCG- -5'
24825 5' -54.6 NC_005284.1 + 39608 0.66 0.730925
Target:  5'- gCGCGAAcuggucggucggcACGGCcGCaAGgUUGCGGCa -3'
miRNA:   3'- aGCGCUU-------------UGUCGuCGgUCaAGCGCCG- -5'
24825 5' -54.6 NC_005284.1 + 22135 0.66 0.728794
Target:  5'- aUGCGGgagaGGCGGCAGCguGgcgcuaucgaacgaGCGGCg -3'
miRNA:   3'- aGCGCU----UUGUCGUCGguCaag-----------CGCCG- -5'
24825 5' -54.6 NC_005284.1 + 46193 0.66 0.721308
Target:  5'- cUCGCcGAACGcGCAGCCucccgagUCGUGGg -3'
miRNA:   3'- -AGCGcUUUGU-CGUCGGuca----AGCGCCg -5'
24825 5' -54.6 NC_005284.1 + 33219 0.66 0.721308
Target:  5'- gCGCGucGAACGcccgcGCGGCCuGcUCGuCGGCa -3'
miRNA:   3'- aGCGC--UUUGU-----CGUCGGuCaAGC-GCCG- -5'
24825 5' -54.6 NC_005284.1 + 4468 0.66 0.721308
Target:  5'- -gGCcGAGCAaaAGCUGGcUCGCGGCg -3'
miRNA:   3'- agCGcUUUGUcgUCGGUCaAGCGCCG- -5'
24825 5' -54.6 NC_005284.1 + 9684 0.67 0.710537
Target:  5'- -aGCGucGCAGCAGUCAacggCGCucGGCa -3'
miRNA:   3'- agCGCuuUGUCGUCGGUcaa-GCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.