Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24825 | 5' | -54.6 | NC_005284.1 | + | 36113 | 0.66 | 0.763377 |
Target: 5'- gUCGCGAuucGGCGuGCGGCUGuaccagaucuccGUUCGCuGCg -3' miRNA: 3'- -AGCGCU---UUGU-CGUCGGU------------CAAGCGcCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 40379 | 0.66 | 0.763377 |
Target: 5'- -aGCGguGCAGCgAGCaAGgcUGCGGUa -3' miRNA: 3'- agCGCuuUGUCG-UCGgUCaaGCGCCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 18001 | 0.66 | 0.763377 |
Target: 5'- gCGCGc-GCAGUcaAGUCGG-UCGaCGGCg -3' miRNA: 3'- aGCGCuuUGUCG--UCGGUCaAGC-GCCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 21588 | 0.66 | 0.763377 |
Target: 5'- aCGCGcAGCGGCAuGCCGaagCGUugGGCa -3' miRNA: 3'- aGCGCuUUGUCGU-CGGUcaaGCG--CCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 21727 | 0.66 | 0.762348 |
Target: 5'- aUGCGuguacgaGAACGGCGauggugugugccGCCAGUgCGCGGa -3' miRNA: 3'- aGCGC-------UUUGUCGU------------CGGUCAaGCGCCg -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 22261 | 0.66 | 0.760288 |
Target: 5'- cCGCGAGGguGgcgagccugacgaaCAGCCAGcgCGaGGCa -3' miRNA: 3'- aGCGCUUUguC--------------GUCGGUCaaGCgCCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 12245 | 0.66 | 0.753035 |
Target: 5'- aUCcCGgcGCAGCuuucgaacGGCgAGUUCGUGGUn -3' miRNA: 3'- -AGcGCuuUGUCG--------UCGgUCAAGCGCCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 8744 | 0.66 | 0.746769 |
Target: 5'- cCGCGAAuacgcacaagccgccGCAGCGGC--GUUCgGCGuGCa -3' miRNA: 3'- aGCGCUU---------------UGUCGUCGguCAAG-CGC-CG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 23355 | 0.66 | 0.742568 |
Target: 5'- gCGCGccGCAGCGGCgCAcgUCGCccgcgaacuGGCg -3' miRNA: 3'- aGCGCuuUGUCGUCG-GUcaAGCG---------CCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 18103 | 0.66 | 0.742568 |
Target: 5'- cUCGCGgcGCAGCAGUaucgcgUUGUGaGCg -3' miRNA: 3'- -AGCGCuuUGUCGUCGguca--AGCGC-CG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 48466 | 0.66 | 0.740461 |
Target: 5'- uUCGcCGGAuGCAGCAGUCGGgcuggcuaauacUCGUGaGCg -3' miRNA: 3'- -AGC-GCUU-UGUCGUCGGUCa-----------AGCGC-CG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 251 | 0.66 | 0.731989 |
Target: 5'- -gGCu-GACAGaGGCCGcugUCGCGGCg -3' miRNA: 3'- agCGcuUUGUCgUCGGUca-AGCGCCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 48968 | 0.66 | 0.731989 |
Target: 5'- aUCGaCGAAGCGGU-GCUg---CGCGGCu -3' miRNA: 3'- -AGC-GCUUUGUCGuCGGucaaGCGCCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 53551 | 0.66 | 0.731989 |
Target: 5'- gUCGUGAugaugaacaugAGCGGCuGCCGGcgCGCGc- -3' miRNA: 3'- -AGCGCU-----------UUGUCGuCGGUCaaGCGCcg -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 39608 | 0.66 | 0.730925 |
Target: 5'- gCGCGAAcuggucggucggcACGGCcGCaAGgUUGCGGCa -3' miRNA: 3'- aGCGCUU-------------UGUCGuCGgUCaAGCGCCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 22135 | 0.66 | 0.728794 |
Target: 5'- aUGCGGgagaGGCGGCAGCguGgcgcuaucgaacgaGCGGCg -3' miRNA: 3'- aGCGCU----UUGUCGUCGguCaag-----------CGCCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 46193 | 0.66 | 0.721308 |
Target: 5'- cUCGCcGAACGcGCAGCCucccgagUCGUGGg -3' miRNA: 3'- -AGCGcUUUGU-CGUCGGuca----AGCGCCg -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 4468 | 0.66 | 0.721308 |
Target: 5'- -gGCcGAGCAaaAGCUGGcUCGCGGCg -3' miRNA: 3'- agCGcUUUGUcgUCGGUCaAGCGCCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 33219 | 0.66 | 0.721308 |
Target: 5'- gCGCGucGAACGcccgcGCGGCCuGcUCGuCGGCa -3' miRNA: 3'- aGCGC--UUUGU-----CGUCGGuCaAGC-GCCG- -5' |
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24825 | 5' | -54.6 | NC_005284.1 | + | 9684 | 0.67 | 0.710537 |
Target: 5'- -aGCGucGCAGCAGUCAacggCGCucGGCa -3' miRNA: 3'- agCGCuuUGUCGUCGGUcaa-GCG--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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