miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 32991 0.66 0.617866
Target:  5'- cGCCACCGGCugccGUGCAgUGUCGGACa- -3'
miRNA:   3'- -UGGUGGCUGc---CGCGUaGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 54330 0.66 0.617866
Target:  5'- -gCGCCGACcaGGCGCugccggcUCGCCGGGuCGa -3'
miRNA:   3'- ugGUGGCUG--CCGCGu------AGCGGUUU-GCa -5'
24826 3' -57 NC_005284.1 + 22796 0.67 0.528849
Target:  5'- gACCAuCCGGagaucCGGCGCGuguUCGCCGguuuccauaucgagAGCGUg -3'
miRNA:   3'- -UGGU-GGCU-----GCCGCGU---AGCGGU--------------UUGCA- -5'
24826 3' -57 NC_005284.1 + 46346 0.67 0.585342
Target:  5'- uCCGCCGucGCGG-GC-UCGCCGGACc- -3'
miRNA:   3'- uGGUGGC--UGCCgCGuAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 37066 0.67 0.574566
Target:  5'- cGCCugCGAC-GUGCA--GCCGAACGc -3'
miRNA:   3'- -UGGugGCUGcCGCGUagCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 39440 0.67 0.563836
Target:  5'- aGCCAUCGGCc-UGCA-CGCCGAGCGa -3'
miRNA:   3'- -UGGUGGCUGccGCGUaGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 16200 0.67 0.55316
Target:  5'- cUCGCCG-CGuGCGC-UCGgCCGAACGg -3'
miRNA:   3'- uGGUGGCuGC-CGCGuAGC-GGUUUGCa -5'
24826 3' -57 NC_005284.1 + 1858 0.67 0.55316
Target:  5'- aGCCAUCGGCuucGGCGCccUGCCGuuccACGUg -3'
miRNA:   3'- -UGGUGGCUG---CCGCGuaGCGGUu---UGCA- -5'
24826 3' -57 NC_005284.1 + 38078 0.67 0.531998
Target:  5'- gGCgCACCcACGGCGCGUCGgaCGucAGCGg -3'
miRNA:   3'- -UG-GUGGcUGCCGCGUAGCg-GU--UUGCa -5'
24826 3' -57 NC_005284.1 + 9556 0.67 0.531998
Target:  5'- -aCACgaGGCGGCGCAggcagcgcUCGCCaAAGCGc -3'
miRNA:   3'- ugGUGg-CUGCCGCGU--------AGCGG-UUUGCa -5'
24826 3' -57 NC_005284.1 + 47689 0.67 0.531998
Target:  5'- uGCCGCUGACGGCaaggaaggGCAcgCGCgCucGCGUg -3'
miRNA:   3'- -UGGUGGCUGCCG--------CGUa-GCG-GuuUGCA- -5'
24826 3' -57 NC_005284.1 + 6996 0.67 0.531998
Target:  5'- gGCgCGCuCGACauGGCGC-UCGCCGGGCu- -3'
miRNA:   3'- -UG-GUG-GCUG--CCGCGuAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 18019 0.67 0.574566
Target:  5'- ---gUCGACGGCGaCAcggucacgcUCGCCGAGCGc -3'
miRNA:   3'- ugguGGCUGCCGC-GU---------AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 21844 0.67 0.585342
Target:  5'- cGCCGCCGGCGuGgGCGauggUGCCGccgccuaugcaGACGUc -3'
miRNA:   3'- -UGGUGGCUGC-CgCGUa---GCGGU-----------UUGCA- -5'
24826 3' -57 NC_005284.1 + 33043 0.68 0.500832
Target:  5'- cGCgCACUGGCGGCacacacCAUCGCCGuucuCGUa -3'
miRNA:   3'- -UG-GUGGCUGCCGc-----GUAGCGGUuu--GCA- -5'
24826 3' -57 NC_005284.1 + 34795 0.68 0.470496
Target:  5'- uUCGCCGACcucgucauaGGCGCGgUCGCCGAucauaucgaucACGUc -3'
miRNA:   3'- uGGUGGCUG---------CCGCGU-AGCGGUU-----------UGCA- -5'
24826 3' -57 NC_005284.1 + 30930 0.68 0.521526
Target:  5'- -gCGCCG-UGGCGCuuUCGCCGccGGCGa -3'
miRNA:   3'- ugGUGGCuGCCGCGu-AGCGGU--UUGCa -5'
24826 3' -57 NC_005284.1 + 10940 0.68 0.511136
Target:  5'- cCCGCaUGGcCGGCcuCGUCGCCGGACGa -3'
miRNA:   3'- uGGUG-GCU-GCCGc-GUAGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 15462 0.68 0.500832
Target:  5'- uGCUACgCGAuCGuGCGCGacugguaucUCGCCGAGCGc -3'
miRNA:   3'- -UGGUG-GCU-GC-CGCGU---------AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 17882 0.68 0.500832
Target:  5'- gGCCGCCGGaucggcgGGCGCAUcCGCgcAGCGg -3'
miRNA:   3'- -UGGUGGCUg------CCGCGUA-GCGguUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.