miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 44991 0.71 0.359718
Target:  5'- gACUGCCGGCgacguuGGCGCG-CGCCGuugcGACGUg -3'
miRNA:   3'- -UGGUGGCUG------CCGCGUaGCGGU----UUGCA- -5'
24826 3' -57 NC_005284.1 + 23354 0.71 0.327059
Target:  5'- gGCgCGCCGcaGCGGCGCAcgUCGCCc-GCGa -3'
miRNA:   3'- -UG-GUGGC--UGCCGCGU--AGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 23826 0.71 0.327059
Target:  5'- gACCAgCCGACGGCGgCcuacauugggugAUCGCCGgcGGCGa -3'
miRNA:   3'- -UGGU-GGCUGCCGC-G------------UAGCGGU--UUGCa -5'
24826 3' -57 NC_005284.1 + 49351 0.71 0.359718
Target:  5'- gACgACCGAacuauCGGuCGCAgcuUCGCCGAGCGc -3'
miRNA:   3'- -UGgUGGCU-----GCC-GCGU---AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 26239 0.7 0.41282
Target:  5'- cGCuCACCGAUGGCGaacgUGCCGgguauGACGUg -3'
miRNA:   3'- -UG-GUGGCUGCCGCgua-GCGGU-----UUGCA- -5'
24826 3' -57 NC_005284.1 + 39828 0.7 0.403638
Target:  5'- aGCCGCCGaACGGCagcGCGUuauucaCGCCAaaucGACGUu -3'
miRNA:   3'- -UGGUGGC-UGCCG---CGUA------GCGGU----UUGCA- -5'
24826 3' -57 NC_005284.1 + 48952 0.7 0.41282
Target:  5'- uGCC-CCGGCGGacuGCAUCGaCgAAGCGg -3'
miRNA:   3'- -UGGuGGCUGCCg--CGUAGC-GgUUUGCa -5'
24826 3' -57 NC_005284.1 + 47066 0.7 0.385665
Target:  5'- cGCCGCCGGCGGCgGCAcgaGCUucGGCGc -3'
miRNA:   3'- -UGGUGGCUGCCG-CGUag-CGGu-UUGCa -5'
24826 3' -57 NC_005284.1 + 33124 0.7 0.41282
Target:  5'- cACCGCCGacGCGGCGgCAUCGUgc-GCGg -3'
miRNA:   3'- -UGGUGGC--UGCCGC-GUAGCGguuUGCa -5'
24826 3' -57 NC_005284.1 + 45269 0.7 0.41282
Target:  5'- uCC-UCGACGaGCGC-UCGCCGGGCGc -3'
miRNA:   3'- uGGuGGCUGC-CGCGuAGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 27302 0.69 0.431566
Target:  5'- cGCCACCGugGGCGCAagauaGuCCGggUa- -3'
miRNA:   3'- -UGGUGGCugCCGCGUag---C-GGUuuGca -5'
24826 3' -57 NC_005284.1 + 38715 0.69 0.450801
Target:  5'- gGCUGCCGGCucaauGCGCugcauggCGCCGGACGg -3'
miRNA:   3'- -UGGUGGCUGc----CGCGua-----GCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 47273 0.69 0.441124
Target:  5'- aACCucgugAUCGACGGC-CGUCGCC--GCGUg -3'
miRNA:   3'- -UGG-----UGGCUGCCGcGUAGCGGuuUGCA- -5'
24826 3' -57 NC_005284.1 + 11860 0.69 0.422131
Target:  5'- uGCagGCCGACuGGCGCGUCGgCGugaAGCGg -3'
miRNA:   3'- -UGg-UGGCUG-CCGCGUAGCgGU---UUGCa -5'
24826 3' -57 NC_005284.1 + 10126 0.69 0.422131
Target:  5'- aGCgCGgCGACGGCGCAgacggCGCuCGcGCGUa -3'
miRNA:   3'- -UG-GUgGCUGCCGCGUa----GCG-GUuUGCA- -5'
24826 3' -57 NC_005284.1 + 19021 0.69 0.422131
Target:  5'- cGCUGCaGGCGGCG-AUCGCCGAggGCGa -3'
miRNA:   3'- -UGGUGgCUGCCGCgUAGCGGUU--UGCa -5'
24826 3' -57 NC_005284.1 + 46689 0.69 0.422131
Target:  5'- cGCCGCCGcgaccGCGGuUGCAUCGUCGucCGa -3'
miRNA:   3'- -UGGUGGC-----UGCC-GCGUAGCGGUuuGCa -5'
24826 3' -57 NC_005284.1 + 33043 0.68 0.500832
Target:  5'- cGCgCACUGGCGGCacacacCAUCGCCGuucuCGUa -3'
miRNA:   3'- -UG-GUGGCUGCCGc-----GUAGCGGUuu--GCA- -5'
24826 3' -57 NC_005284.1 + 5163 0.68 0.521526
Target:  5'- cGCCGCUGACGcGCG-AUCaGCuCAAACGc -3'
miRNA:   3'- -UGGUGGCUGC-CGCgUAG-CG-GUUUGCa -5'
24826 3' -57 NC_005284.1 + 35976 0.68 0.500832
Target:  5'- uUCGCCGggaaccACGGCccgaCGUUGCCGGACGUg -3'
miRNA:   3'- uGGUGGC------UGCCGc---GUAGCGGUUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.