Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24826 | 3' | -57 | NC_005284.1 | + | 17882 | 0.68 | 0.500832 |
Target: 5'- gGCCGCCGGaucggcgGGCGCAUcCGCgcAGCGg -3' miRNA: 3'- -UGGUGGCUg------CCGCGUA-GCGguUUGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 15462 | 0.68 | 0.500832 |
Target: 5'- uGCUACgCGAuCGuGCGCGacugguaucUCGCCGAGCGc -3' miRNA: 3'- -UGGUG-GCU-GC-CGCGU---------AGCGGUUUGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 12519 | 0.68 | 0.480507 |
Target: 5'- gACCucgaCGAcCGGCGCAcacUCGCCcAAACGc -3' miRNA: 3'- -UGGug--GCU-GCCGCGU---AGCGG-UUUGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 34795 | 0.68 | 0.470496 |
Target: 5'- uUCGCCGACcucgucauaGGCGCGgUCGCCGAucauaucgaucACGUc -3' miRNA: 3'- uGGUGGCUG---------CCGCGU-AGCGGUU-----------UGCA- -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 38715 | 0.69 | 0.450801 |
Target: 5'- gGCUGCCGGCucaauGCGCugcauggCGCCGGACGg -3' miRNA: 3'- -UGGUGGCUGc----CGCGua-----GCGGUUUGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 47273 | 0.69 | 0.441124 |
Target: 5'- aACCucgugAUCGACGGC-CGUCGCC--GCGUg -3' miRNA: 3'- -UGG-----UGGCUGCCGcGUAGCGGuuUGCA- -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 27302 | 0.69 | 0.431566 |
Target: 5'- cGCCACCGugGGCGCAagauaGuCCGggUa- -3' miRNA: 3'- -UGGUGGCugCCGCGUag---C-GGUuuGca -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 10126 | 0.69 | 0.422131 |
Target: 5'- aGCgCGgCGACGGCGCAgacggCGCuCGcGCGUa -3' miRNA: 3'- -UG-GUgGCUGCCGCGUa----GCG-GUuUGCA- -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 19021 | 0.69 | 0.422131 |
Target: 5'- cGCUGCaGGCGGCG-AUCGCCGAggGCGa -3' miRNA: 3'- -UGGUGgCUGCCGCgUAGCGGUU--UGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 11860 | 0.69 | 0.422131 |
Target: 5'- uGCagGCCGACuGGCGCGUCGgCGugaAGCGg -3' miRNA: 3'- -UGg-UGGCUG-CCGCGUAGCgGU---UUGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 46689 | 0.69 | 0.422131 |
Target: 5'- cGCCGCCGcgaccGCGGuUGCAUCGUCGucCGa -3' miRNA: 3'- -UGGUGGC-----UGCC-GCGUAGCGGUuuGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 45269 | 0.7 | 0.41282 |
Target: 5'- uCC-UCGACGaGCGC-UCGCCGGGCGc -3' miRNA: 3'- uGGuGGCUGC-CGCGuAGCGGUUUGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 26239 | 0.7 | 0.41282 |
Target: 5'- cGCuCACCGAUGGCGaacgUGCCGgguauGACGUg -3' miRNA: 3'- -UG-GUGGCUGCCGCgua-GCGGU-----UUGCA- -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 33124 | 0.7 | 0.41282 |
Target: 5'- cACCGCCGacGCGGCGgCAUCGUgc-GCGg -3' miRNA: 3'- -UGGUGGC--UGCCGC-GUAGCGguuUGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 48952 | 0.7 | 0.41282 |
Target: 5'- uGCC-CCGGCGGacuGCAUCGaCgAAGCGg -3' miRNA: 3'- -UGGuGGCUGCCg--CGUAGC-GgUUUGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 39828 | 0.7 | 0.403638 |
Target: 5'- aGCCGCCGaACGGCagcGCGUuauucaCGCCAaaucGACGUu -3' miRNA: 3'- -UGGUGGC-UGCCG---CGUA------GCGGU----UUGCA- -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 47066 | 0.7 | 0.385665 |
Target: 5'- cGCCGCCGGCGGCgGCAcgaGCUucGGCGc -3' miRNA: 3'- -UGGUGGCUGCCG-CGUag-CGGu-UUGCa -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 36740 | 0.71 | 0.359718 |
Target: 5'- cGCCACCGGauCGGCGUcgaagcgcUCGgCGAGCGUg -3' miRNA: 3'- -UGGUGGCU--GCCGCGu-------AGCgGUUUGCA- -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 44991 | 0.71 | 0.359718 |
Target: 5'- gACUGCCGGCgacguuGGCGCG-CGCCGuugcGACGUg -3' miRNA: 3'- -UGGUGGCUG------CCGCGUaGCGGU----UUGCA- -5' |
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24826 | 3' | -57 | NC_005284.1 | + | 49351 | 0.71 | 0.359718 |
Target: 5'- gACgACCGAacuauCGGuCGCAgcuUCGCCGAGCGc -3' miRNA: 3'- -UGgUGGCU-----GCC-GCGU---AGCGGUUUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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