miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 30930 0.68 0.521526
Target:  5'- -gCGCCG-UGGCGCuuUCGCCGccGGCGa -3'
miRNA:   3'- ugGUGGCuGCCGCGu-AGCGGU--UUGCa -5'
24826 3' -57 NC_005284.1 + 32674 0.66 0.596156
Target:  5'- -gCAUCGGCGGgggccagcggacCGCAagCGCCAAGCGc -3'
miRNA:   3'- ugGUGGCUGCC------------GCGUa-GCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 32957 0.78 0.124178
Target:  5'- -aCGCCGGCGGCGCuggaagCGCCGGGCa- -3'
miRNA:   3'- ugGUGGCUGCCGCGua----GCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 32991 0.66 0.617866
Target:  5'- cGCCACCGGCugccGUGCAgUGUCGGACa- -3'
miRNA:   3'- -UGGUGGCUGc---CGCGUaGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 33043 0.68 0.500832
Target:  5'- cGCgCACUGGCGGCacacacCAUCGCCGuucuCGUa -3'
miRNA:   3'- -UG-GUGGCUGCCGc-----GUAGCGGUuu--GCA- -5'
24826 3' -57 NC_005284.1 + 33124 0.7 0.41282
Target:  5'- cACCGCCGacGCGGCGgCAUCGUgc-GCGg -3'
miRNA:   3'- -UGGUGGC--UGCCGC-GUAGCGguuUGCa -5'
24826 3' -57 NC_005284.1 + 33385 0.66 0.628744
Target:  5'- cGCUGCCGACGGC---UCGCCAucaccCGa -3'
miRNA:   3'- -UGGUGGCUGCCGcguAGCGGUuu---GCa -5'
24826 3' -57 NC_005284.1 + 34795 0.68 0.470496
Target:  5'- uUCGCCGACcucgucauaGGCGCGgUCGCCGAucauaucgaucACGUc -3'
miRNA:   3'- uGGUGGCUG---------CCGCGU-AGCGGUU-----------UGCA- -5'
24826 3' -57 NC_005284.1 + 35866 0.68 0.521526
Target:  5'- uCgAUCGGCGcGCGCAgcuccgUGCCAAGCGc -3'
miRNA:   3'- uGgUGGCUGC-CGCGUa-----GCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 35976 0.68 0.500832
Target:  5'- uUCGCCGggaaccACGGCccgaCGUUGCCGGACGUg -3'
miRNA:   3'- uGGUGGC------UGCCGc---GUAGCGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 36740 0.71 0.359718
Target:  5'- cGCCACCGGauCGGCGUcgaagcgcUCGgCGAGCGUg -3'
miRNA:   3'- -UGGUGGCU--GCCGCGu-------AGCgGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 36847 0.72 0.29665
Target:  5'- gAUCGCCGGCGGCGauugucggCGCCuugucGAGCGUg -3'
miRNA:   3'- -UGGUGGCUGCCGCgua-----GCGG-----UUUGCA- -5'
24826 3' -57 NC_005284.1 + 37066 0.67 0.574566
Target:  5'- cGCCugCGAC-GUGCA--GCCGAACGc -3'
miRNA:   3'- -UGGugGCUGcCGCGUagCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 37382 0.66 0.617866
Target:  5'- -aCGCCG-CGGU-CGUCGCCGuAGCGUu -3'
miRNA:   3'- ugGUGGCuGCCGcGUAGCGGU-UUGCA- -5'
24826 3' -57 NC_005284.1 + 38078 0.67 0.531998
Target:  5'- gGCgCACCcACGGCGCGUCGgaCGucAGCGg -3'
miRNA:   3'- -UG-GUGGcUGCCGCGUAGCg-GU--UUGCa -5'
24826 3' -57 NC_005284.1 + 38715 0.69 0.450801
Target:  5'- gGCUGCCGGCucaauGCGCugcauggCGCCGGACGg -3'
miRNA:   3'- -UGGUGGCUGc----CGCGua-----GCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 38909 0.66 0.616779
Target:  5'- cACCGCCucugcggcgacgaGACGGCaaggcggugaauGCGUCcgaaacgcacGCCGAGCGUg -3'
miRNA:   3'- -UGGUGG-------------CUGCCG------------CGUAG----------CGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 39440 0.67 0.563836
Target:  5'- aGCCAUCGGCc-UGCA-CGCCGAGCGa -3'
miRNA:   3'- -UGGUGGCUGccGCGUaGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 39828 0.7 0.403638
Target:  5'- aGCCGCCGaACGGCagcGCGUuauucaCGCCAaaucGACGUu -3'
miRNA:   3'- -UGGUGGC-UGCCG---CGUA------GCGGU----UUGCA- -5'
24826 3' -57 NC_005284.1 + 42517 0.72 0.2894
Target:  5'- cACCACUG-CGGCGCGgaccacgaacUCGCCGuuCGa -3'
miRNA:   3'- -UGGUGGCuGCCGCGU----------AGCGGUuuGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.