miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 30930 0.68 0.521526
Target:  5'- -gCGCCG-UGGCGCuuUCGCCGccGGCGa -3'
miRNA:   3'- ugGUGGCuGCCGCGu-AGCGGU--UUGCa -5'
24826 3' -57 NC_005284.1 + 28666 0.72 0.282289
Target:  5'- cACCGCCGACGGUGUccaacaugggcUUGCCGAugGc -3'
miRNA:   3'- -UGGUGGCUGCCGCGu----------AGCGGUUugCa -5'
24826 3' -57 NC_005284.1 + 27865 0.78 0.117482
Target:  5'- cGCCGCC--CGGCGCAUCGCCGAAaucaGUc -3'
miRNA:   3'- -UGGUGGcuGCCGCGUAGCGGUUUg---CA- -5'
24826 3' -57 NC_005284.1 + 27302 0.69 0.431566
Target:  5'- cGCCACCGugGGCGCAagauaGuCCGggUa- -3'
miRNA:   3'- -UGGUGGCugCCGCGUag---C-GGUuuGca -5'
24826 3' -57 NC_005284.1 + 26239 0.7 0.41282
Target:  5'- cGCuCACCGAUGGCGaacgUGCCGgguauGACGUg -3'
miRNA:   3'- -UG-GUGGCUGCCGCgua-GCGGU-----UUGCA- -5'
24826 3' -57 NC_005284.1 + 25528 0.66 0.638536
Target:  5'- aGCgGCCGuCGucgugcGCGCGUCGCUcuauuuuGAGCGUg -3'
miRNA:   3'- -UGgUGGCuGC------CGCGUAGCGG-------UUUGCA- -5'
24826 3' -57 NC_005284.1 + 23826 0.71 0.327059
Target:  5'- gACCAgCCGACGGCGgCcuacauugggugAUCGCCGgcGGCGa -3'
miRNA:   3'- -UGGU-GGCUGCCGC-G------------UAGCGGU--UUGCa -5'
24826 3' -57 NC_005284.1 + 23438 0.76 0.156326
Target:  5'- gGCCACCGACaGCGCGuguucugcgcgucgcUCGCC-GACGUu -3'
miRNA:   3'- -UGGUGGCUGcCGCGU---------------AGCGGuUUGCA- -5'
24826 3' -57 NC_005284.1 + 23354 0.71 0.327059
Target:  5'- gGCgCGCCGcaGCGGCGCAcgUCGCCc-GCGa -3'
miRNA:   3'- -UG-GUGGC--UGCCGCGU--AGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 22796 0.67 0.528849
Target:  5'- gACCAuCCGGagaucCGGCGCGuguUCGCCGguuuccauaucgagAGCGUg -3'
miRNA:   3'- -UGGU-GGCU-----GCCGCGU---AGCGGU--------------UUGCA- -5'
24826 3' -57 NC_005284.1 + 22578 0.76 0.172287
Target:  5'- aGCUAUCGGCGGCGCAcauUCGUCucGCGa -3'
miRNA:   3'- -UGGUGGCUGCCGCGU---AGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 21844 0.67 0.585342
Target:  5'- cGCCGCCGGCGuGgGCGauggUGCCGccgccuaugcaGACGUc -3'
miRNA:   3'- -UGGUGGCUGC-CgCGUa---GCGGU-----------UUGCA- -5'
24826 3' -57 NC_005284.1 + 21782 0.66 0.607001
Target:  5'- cAUCACCgGGCaGCaGCAUCGCCcgcuGCGg -3'
miRNA:   3'- -UGGUGG-CUGcCG-CGUAGCGGuu--UGCa -5'
24826 3' -57 NC_005284.1 + 21321 0.72 0.311573
Target:  5'- cGCCgGCCGACGGCGCGUguaaGCacuGCGg -3'
miRNA:   3'- -UGG-UGGCUGCCGCGUAg---CGguuUGCa -5'
24826 3' -57 NC_005284.1 + 19021 0.69 0.422131
Target:  5'- cGCUGCaGGCGGCG-AUCGCCGAggGCGa -3'
miRNA:   3'- -UGGUGgCUGCCGCgUAGCGGUU--UGCa -5'
24826 3' -57 NC_005284.1 + 18563 0.74 0.218672
Target:  5'- cGCCGCCGuCGGuCGUGUCGCUGAcuGCGg -3'
miRNA:   3'- -UGGUGGCuGCC-GCGUAGCGGUU--UGCa -5'
24826 3' -57 NC_005284.1 + 18019 0.67 0.574566
Target:  5'- ---gUCGACGGCGaCAcggucacgcUCGCCGAGCGc -3'
miRNA:   3'- ugguGGCUGCCGC-GU---------AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 17882 0.68 0.500832
Target:  5'- gGCCGCCGGaucggcgGGCGCAUcCGCgcAGCGg -3'
miRNA:   3'- -UGGUGGCUg------CCGCGUA-GCGguUUGCa -5'
24826 3' -57 NC_005284.1 + 16200 0.67 0.55316
Target:  5'- cUCGCCG-CGuGCGC-UCGgCCGAACGg -3'
miRNA:   3'- uGGUGGCuGC-CGCGuAGC-GGUUUGCa -5'
24826 3' -57 NC_005284.1 + 15889 0.66 0.628744
Target:  5'- gACCGCagaGGCGGUGCGcgCGCUAu-CGg -3'
miRNA:   3'- -UGGUGg--CUGCCGCGUa-GCGGUuuGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.