miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 46689 0.69 0.422131
Target:  5'- cGCCGCCGcgaccGCGGuUGCAUCGUCGucCGa -3'
miRNA:   3'- -UGGUGGC-----UGCC-GCGUAGCGGUuuGCa -5'
24826 3' -57 NC_005284.1 + 27302 0.69 0.431566
Target:  5'- cGCCACCGugGGCGCAagauaGuCCGggUa- -3'
miRNA:   3'- -UGGUGGCugCCGCGUag---C-GGUuuGca -5'
24826 3' -57 NC_005284.1 + 16200 0.67 0.55316
Target:  5'- cUCGCCG-CGuGCGC-UCGgCCGAACGg -3'
miRNA:   3'- uGGUGGCuGC-CGCGuAGC-GGUUUGCa -5'
24826 3' -57 NC_005284.1 + 32991 0.66 0.617866
Target:  5'- cGCCACCGGCugccGUGCAgUGUCGGACa- -3'
miRNA:   3'- -UGGUGGCUGc---CGCGUaGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 36847 0.72 0.29665
Target:  5'- gAUCGCCGGCGGCGauugucggCGCCuugucGAGCGUg -3'
miRNA:   3'- -UGGUGGCUGCCGCgua-----GCGG-----UUUGCA- -5'
24826 3' -57 NC_005284.1 + 47066 0.7 0.385665
Target:  5'- cGCCGCCGGCGGCgGCAcgaGCUucGGCGc -3'
miRNA:   3'- -UGGUGGCUGCCG-CGUag-CGGu-UUGCa -5'
24826 3' -57 NC_005284.1 + 35976 0.68 0.500832
Target:  5'- uUCGCCGggaaccACGGCccgaCGUUGCCGGACGUg -3'
miRNA:   3'- uGGUGGC------UGCCGc---GUAGCGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 51813 0.66 0.617866
Target:  5'- gGCCugC-AUGGCGC--CGCCAAACu- -3'
miRNA:   3'- -UGGugGcUGCCGCGuaGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 39828 0.7 0.403638
Target:  5'- aGCCGCCGaACGGCagcGCGUuauucaCGCCAaaucGACGUu -3'
miRNA:   3'- -UGGUGGC-UGCCG---CGUA------GCGGU----UUGCA- -5'
24826 3' -57 NC_005284.1 + 54330 0.66 0.617866
Target:  5'- -gCGCCGACcaGGCGCugccggcUCGCCGGGuCGa -3'
miRNA:   3'- ugGUGGCUG--CCGCGu------AGCGGUUU-GCa -5'
24826 3' -57 NC_005284.1 + 12519 0.68 0.480507
Target:  5'- gACCucgaCGAcCGGCGCAcacUCGCCcAAACGc -3'
miRNA:   3'- -UGGug--GCU-GCCGCGU---AGCGG-UUUGCa -5'
24826 3' -57 NC_005284.1 + 33124 0.7 0.41282
Target:  5'- cACCGCCGacGCGGCGgCAUCGUgc-GCGg -3'
miRNA:   3'- -UGGUGGC--UGCCGC-GUAGCGguuUGCa -5'
24826 3' -57 NC_005284.1 + 5163 0.68 0.521526
Target:  5'- cGCCGCUGACGcGCG-AUCaGCuCAAACGc -3'
miRNA:   3'- -UGGUGGCUGC-CGCgUAG-CG-GUUUGCa -5'
24826 3' -57 NC_005284.1 + 1858 0.67 0.55316
Target:  5'- aGCCAUCGGCuucGGCGCccUGCCGuuccACGUg -3'
miRNA:   3'- -UGGUGGCUG---CCGCGuaGCGGUu---UGCA- -5'
24826 3' -57 NC_005284.1 + 46346 0.67 0.585342
Target:  5'- uCCGCCGucGCGG-GC-UCGCCGGACc- -3'
miRNA:   3'- uGGUGGC--UGCCgCGuAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 38909 0.66 0.616779
Target:  5'- cACCGCCucugcggcgacgaGACGGCaaggcggugaauGCGUCcgaaacgcacGCCGAGCGUg -3'
miRNA:   3'- -UGGUGG-------------CUGCCG------------CGUAG----------CGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 44706 0.73 0.255229
Target:  5'- cCCGCCG-CGGuCGCgGUCGCCGcGCGUu -3'
miRNA:   3'- uGGUGGCuGCC-GCG-UAGCGGUuUGCA- -5'
24826 3' -57 NC_005284.1 + 42517 0.72 0.2894
Target:  5'- cACCACUG-CGGCGCGgaccacgaacUCGCCGuuCGa -3'
miRNA:   3'- -UGGUGGCuGCCGCGU----------AGCGGUuuGCa -5'
24826 3' -57 NC_005284.1 + 23354 0.71 0.327059
Target:  5'- gGCgCGCCGcaGCGGCGCAcgUCGCCc-GCGa -3'
miRNA:   3'- -UG-GUGGC--UGCCGCGU--AGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 36740 0.71 0.359718
Target:  5'- cGCCACCGGauCGGCGUcgaagcgcUCGgCGAGCGUg -3'
miRNA:   3'- -UGGUGGCU--GCCGCGu-------AGCgGUUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.