miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 23438 0.76 0.156326
Target:  5'- gGCCACCGACaGCGCGuguucugcgcgucgcUCGCC-GACGUu -3'
miRNA:   3'- -UGGUGGCUGcCGCGU---------------AGCGGuUUGCA- -5'
24826 3' -57 NC_005284.1 + 39828 0.7 0.403638
Target:  5'- aGCCGCCGaACGGCagcGCGUuauucaCGCCAaaucGACGUu -3'
miRNA:   3'- -UGGUGGC-UGCCG---CGUA------GCGGU----UUGCA- -5'
24826 3' -57 NC_005284.1 + 26239 0.7 0.41282
Target:  5'- cGCuCACCGAUGGCGaacgUGCCGgguauGACGUg -3'
miRNA:   3'- -UG-GUGGCUGCCGCgua-GCGGU-----UUGCA- -5'
24826 3' -57 NC_005284.1 + 44300 1.06 0.001068
Target:  5'- gACCACCGACGGCGCAUCGCCAAACGUc -3'
miRNA:   3'- -UGGUGGCUGCCGCGUAGCGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 4349 0.66 0.617866
Target:  5'- uCCGCCGGCgagaaGGCGC-UCGCUgAAGCa- -3'
miRNA:   3'- uGGUGGCUG-----CCGCGuAGCGG-UUUGca -5'
24826 3' -57 NC_005284.1 + 7733 0.73 0.242515
Target:  5'- cGCCGCCGGCGGCGUAacUCcCCGAuCGc -3'
miRNA:   3'- -UGGUGGCUGCCGCGU--AGcGGUUuGCa -5'
24826 3' -57 NC_005284.1 + 18563 0.74 0.218672
Target:  5'- cGCCGCCGuCGGuCGUGUCGCUGAcuGCGg -3'
miRNA:   3'- -UGGUGGCuGCC-GCGUAGCGGUU--UGCa -5'
24826 3' -57 NC_005284.1 + 22578 0.76 0.172287
Target:  5'- aGCUAUCGGCGGCGCAcauUCGUCucGCGa -3'
miRNA:   3'- -UGGUGGCUGCCGCGU---AGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 11860 0.69 0.422131
Target:  5'- uGCagGCCGACuGGCGCGUCGgCGugaAGCGg -3'
miRNA:   3'- -UGg-UGGCUG-CCGCGUAGCgGU---UUGCa -5'
24826 3' -57 NC_005284.1 + 47273 0.69 0.441124
Target:  5'- aACCucgugAUCGACGGC-CGUCGCC--GCGUg -3'
miRNA:   3'- -UGG-----UGGCUGCCGcGUAGCGGuuUGCA- -5'
24826 3' -57 NC_005284.1 + 44934 0.66 0.607001
Target:  5'- -gCACCGcgccuCGGUGUAUCGCCcgcCGUg -3'
miRNA:   3'- ugGUGGCu----GCCGCGUAGCGGuuuGCA- -5'
24826 3' -57 NC_005284.1 + 42646 0.66 0.596156
Target:  5'- gGCCAaucCUGGCGGCGCuuagCGacauguuuCCAGACGg -3'
miRNA:   3'- -UGGU---GGCUGCCGCGua--GC--------GGUUUGCa -5'
24826 3' -57 NC_005284.1 + 32674 0.66 0.596156
Target:  5'- -gCAUCGGCGGgggccagcggacCGCAagCGCCAAGCGc -3'
miRNA:   3'- ugGUGGCUGCC------------GCGUa-GCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 21844 0.67 0.585342
Target:  5'- cGCCGCCGGCGuGgGCGauggUGCCGccgccuaugcaGACGUc -3'
miRNA:   3'- -UGGUGGCUGC-CgCGUa---GCGGU-----------UUGCA- -5'
24826 3' -57 NC_005284.1 + 18019 0.67 0.574566
Target:  5'- ---gUCGACGGCGaCAcggucacgcUCGCCGAGCGc -3'
miRNA:   3'- ugguGGCUGCCGC-GU---------AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 47689 0.67 0.531998
Target:  5'- uGCCGCUGACGGCaaggaaggGCAcgCGCgCucGCGUg -3'
miRNA:   3'- -UGGUGGCUGCCG--------CGUa-GCG-GuuUGCA- -5'
24826 3' -57 NC_005284.1 + 6996 0.67 0.531998
Target:  5'- gGCgCGCuCGACauGGCGC-UCGCCGGGCu- -3'
miRNA:   3'- -UG-GUG-GCUG--CCGCGuAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 9556 0.67 0.531998
Target:  5'- -aCACgaGGCGGCGCAggcagcgcUCGCCaAAGCGc -3'
miRNA:   3'- ugGUGg-CUGCCGCGU--------AGCGG-UUUGCa -5'
24826 3' -57 NC_005284.1 + 34795 0.68 0.470496
Target:  5'- uUCGCCGACcucgucauaGGCGCGgUCGCCGAucauaucgaucACGUc -3'
miRNA:   3'- uGGUGGCUG---------CCGCGU-AGCGGUU-----------UGCA- -5'
24826 3' -57 NC_005284.1 + 38715 0.69 0.450801
Target:  5'- gGCUGCCGGCucaauGCGCugcauggCGCCGGACGg -3'
miRNA:   3'- -UGGUGGCUGc----CGCGua-----GCGGUUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.