miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 49351 0.71 0.359718
Target:  5'- gACgACCGAacuauCGGuCGCAgcuUCGCCGAGCGc -3'
miRNA:   3'- -UGgUGGCU-----GCC-GCGU---AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 15462 0.68 0.500832
Target:  5'- uGCUACgCGAuCGuGCGCGacugguaucUCGCCGAGCGc -3'
miRNA:   3'- -UGGUG-GCU-GC-CGCGU---------AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 10940 0.68 0.511136
Target:  5'- cCCGCaUGGcCGGCcuCGUCGCCGGACGa -3'
miRNA:   3'- uGGUG-GCU-GCCGc-GUAGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 25528 0.66 0.638536
Target:  5'- aGCgGCCGuCGucgugcGCGCGUCGCUcuauuuuGAGCGUg -3'
miRNA:   3'- -UGgUGGCuGC------CGCGUAGCGG-------UUUGCA- -5'
24826 3' -57 NC_005284.1 + 33385 0.66 0.628744
Target:  5'- cGCUGCCGACGGC---UCGCCAucaccCGa -3'
miRNA:   3'- -UGGUGGCUGCCGcguAGCGGUuu---GCa -5'
24826 3' -57 NC_005284.1 + 15889 0.66 0.628744
Target:  5'- gACCGCagaGGCGGUGCGcgCGCUAu-CGg -3'
miRNA:   3'- -UGGUGg--CUGCCGCGUa-GCGGUuuGCa -5'
24826 3' -57 NC_005284.1 + 12441 0.66 0.627655
Target:  5'- cGCCAguuucgaUCGAgGGCGgAUCGUCGAACc- -3'
miRNA:   3'- -UGGU-------GGCUgCCGCgUAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 37382 0.66 0.617866
Target:  5'- -aCGCCG-CGGU-CGUCGCCGuAGCGUu -3'
miRNA:   3'- ugGUGGCuGCCGcGUAGCGGU-UUGCA- -5'
24826 3' -57 NC_005284.1 + 10761 0.66 0.607001
Target:  5'- gGCCGCCGAgGGCGUucggcUGCUuucuGACGc -3'
miRNA:   3'- -UGGUGGCUgCCGCGua---GCGGu---UUGCa -5'
24826 3' -57 NC_005284.1 + 4349 0.66 0.617866
Target:  5'- uCCGCCGGCgagaaGGCGC-UCGCUgAAGCa- -3'
miRNA:   3'- uGGUGGCUG-----CCGCGuAGCGG-UUUGca -5'
24826 3' -57 NC_005284.1 + 44934 0.66 0.607001
Target:  5'- -gCACCGcgccuCGGUGUAUCGCCcgcCGUg -3'
miRNA:   3'- ugGUGGCu----GCCGCGUAGCGGuuuGCA- -5'
24826 3' -57 NC_005284.1 + 42646 0.66 0.596156
Target:  5'- gGCCAaucCUGGCGGCGCuuagCGacauguuuCCAGACGg -3'
miRNA:   3'- -UGGU---GGCUGCCGCGua--GC--------GGUUUGCa -5'
24826 3' -57 NC_005284.1 + 32674 0.66 0.596156
Target:  5'- -gCAUCGGCGGgggccagcggacCGCAagCGCCAAGCGc -3'
miRNA:   3'- ugGUGGCUGCC------------GCGUa-GCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 21844 0.67 0.585342
Target:  5'- cGCCGCCGGCGuGgGCGauggUGCCGccgccuaugcaGACGUc -3'
miRNA:   3'- -UGGUGGCUGC-CgCGUa---GCGGU-----------UUGCA- -5'
24826 3' -57 NC_005284.1 + 18019 0.67 0.574566
Target:  5'- ---gUCGACGGCGaCAcggucacgcUCGCCGAGCGc -3'
miRNA:   3'- ugguGGCUGCCGC-GU---------AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 6996 0.67 0.531998
Target:  5'- gGCgCGCuCGACauGGCGC-UCGCCGGGCu- -3'
miRNA:   3'- -UG-GUG-GCUG--CCGCGuAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 47689 0.67 0.531998
Target:  5'- uGCCGCUGACGGCaaggaaggGCAcgCGCgCucGCGUg -3'
miRNA:   3'- -UGGUGGCUGCCG--------CGUa-GCG-GuuUGCA- -5'
24826 3' -57 NC_005284.1 + 9556 0.67 0.531998
Target:  5'- -aCACgaGGCGGCGCAggcagcgcUCGCCaAAGCGc -3'
miRNA:   3'- ugGUGg-CUGCCGCGU--------AGCGG-UUUGCa -5'
24826 3' -57 NC_005284.1 + 22796 0.67 0.528849
Target:  5'- gACCAuCCGGagaucCGGCGCGuguUCGCCGguuuccauaucgagAGCGUg -3'
miRNA:   3'- -UGGU-GGCU-----GCCGCGU---AGCGGU--------------UUGCA- -5'
24826 3' -57 NC_005284.1 + 30930 0.68 0.521526
Target:  5'- -gCGCCG-UGGCGCuuUCGCCGccGGCGa -3'
miRNA:   3'- ugGUGGCuGCCGCGu-AGCGGU--UUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.