miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 52 0.77 0.150489
Target:  5'- cCCACC--CGGCGCAUcCGCCGGGCGg -3'
miRNA:   3'- uGGUGGcuGCCGCGUA-GCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 1073 0.66 0.639624
Target:  5'- uACUACCGACGuGCuGUcuaagAUCGCC-AGCGc -3'
miRNA:   3'- -UGGUGGCUGC-CG-CG-----UAGCGGuUUGCa -5'
24826 3' -57 NC_005284.1 + 1128 0.8 0.093933
Target:  5'- aACCcgGgCGACGGCGCGUCGCCAu-CGUg -3'
miRNA:   3'- -UGG--UgGCUGCCGCGUAGCGGUuuGCA- -5'
24826 3' -57 NC_005284.1 + 1858 0.67 0.55316
Target:  5'- aGCCAUCGGCuucGGCGCccUGCCGuuccACGUg -3'
miRNA:   3'- -UGGUGGCUG---CCGCGuaGCGGUu---UGCA- -5'
24826 3' -57 NC_005284.1 + 4349 0.66 0.617866
Target:  5'- uCCGCCGGCgagaaGGCGC-UCGCUgAAGCa- -3'
miRNA:   3'- uGGUGGCUG-----CCGCGuAGCGG-UUUGca -5'
24826 3' -57 NC_005284.1 + 4674 0.66 0.617866
Target:  5'- -aCGCCG-CGuGCGCgAUCGCCGcguuACGUu -3'
miRNA:   3'- ugGUGGCuGC-CGCG-UAGCGGUu---UGCA- -5'
24826 3' -57 NC_005284.1 + 5163 0.68 0.521526
Target:  5'- cGCCGCUGACGcGCG-AUCaGCuCAAACGc -3'
miRNA:   3'- -UGGUGGCUGC-CGCgUAG-CG-GUUUGCa -5'
24826 3' -57 NC_005284.1 + 6030 0.66 0.639624
Target:  5'- cGCaACUcGCGGCGCA-CGCCGcGCGg -3'
miRNA:   3'- -UGgUGGcUGCCGCGUaGCGGUuUGCa -5'
24826 3' -57 NC_005284.1 + 6996 0.67 0.531998
Target:  5'- gGCgCGCuCGACauGGCGC-UCGCCGGGCu- -3'
miRNA:   3'- -UG-GUG-GCUG--CCGCGuAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 7733 0.73 0.242515
Target:  5'- cGCCGCCGGCGGCGUAacUCcCCGAuCGc -3'
miRNA:   3'- -UGGUGGCUGCCGCGU--AGcGGUUuGCa -5'
24826 3' -57 NC_005284.1 + 9243 0.66 0.639624
Target:  5'- cGCCACgCGGCGGCaUAgagCGCgGAGCa- -3'
miRNA:   3'- -UGGUG-GCUGCCGcGUa--GCGgUUUGca -5'
24826 3' -57 NC_005284.1 + 9556 0.67 0.531998
Target:  5'- -aCACgaGGCGGCGCAggcagcgcUCGCCaAAGCGc -3'
miRNA:   3'- ugGUGg-CUGCCGCGU--------AGCGG-UUUGCa -5'
24826 3' -57 NC_005284.1 + 10126 0.69 0.422131
Target:  5'- aGCgCGgCGACGGCGCAgacggCGCuCGcGCGUa -3'
miRNA:   3'- -UG-GUgGCUGCCGCGUa----GCG-GUuUGCA- -5'
24826 3' -57 NC_005284.1 + 10761 0.66 0.607001
Target:  5'- gGCCGCCGAgGGCGUucggcUGCUuucuGACGc -3'
miRNA:   3'- -UGGUGGCUgCCGCGua---GCGGu---UUGCa -5'
24826 3' -57 NC_005284.1 + 10940 0.68 0.511136
Target:  5'- cCCGCaUGGcCGGCcuCGUCGCCGGACGa -3'
miRNA:   3'- uGGUG-GCU-GCCGc-GUAGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 11573 0.66 0.596156
Target:  5'- aGCCGCCuuucGCGGCG-AUCGUUAGugGa -3'
miRNA:   3'- -UGGUGGc---UGCCGCgUAGCGGUUugCa -5'
24826 3' -57 NC_005284.1 + 11860 0.69 0.422131
Target:  5'- uGCagGCCGACuGGCGCGUCGgCGugaAGCGg -3'
miRNA:   3'- -UGg-UGGCUG-CCGCGUAGCgGU---UUGCa -5'
24826 3' -57 NC_005284.1 + 12441 0.66 0.627655
Target:  5'- cGCCAguuucgaUCGAgGGCGgAUCGUCGAACc- -3'
miRNA:   3'- -UGGU-------GGCUgCCGCgUAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 12519 0.68 0.480507
Target:  5'- gACCucgaCGAcCGGCGCAcacUCGCCcAAACGc -3'
miRNA:   3'- -UGGug--GCU-GCCGCGU---AGCGG-UUUGCa -5'
24826 3' -57 NC_005284.1 + 12991 0.73 0.261788
Target:  5'- uGCCACCGAuCGGaCGCAUaaagaagccuaCGCCAAuCGUc -3'
miRNA:   3'- -UGGUGGCU-GCC-GCGUA-----------GCGGUUuGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.