miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 8127 0.67 0.502119
Target:  5'- cUGuCGCUUgccguuCGCCgucuuGCCgCGUGUCGCCa -3'
miRNA:   3'- -ACuGUGAAac----GCGG-----CGG-GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 6774 0.67 0.512312
Target:  5'- cGACACggucacGCGCgucaCGCCCGCGaauucCGCa -3'
miRNA:   3'- aCUGUGaaa---CGCG----GCGGGCGCa----GCGg -5'
24826 5' -58.4 NC_005284.1 + 51226 0.67 0.512312
Target:  5'- aGGCACggaccUUGUaGCCGCCUuuaccguucuuGCGUUGCa -3'
miRNA:   3'- aCUGUGa----AACG-CGGCGGG-----------CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 43293 0.67 0.512312
Target:  5'- cGACGCUUgcuCGUacauCCCGCGaaUCGCCu -3'
miRNA:   3'- aCUGUGAAac-GCGgc--GGGCGC--AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 5896 0.67 0.482008
Target:  5'- cGACACcUU-CGCCGCCgGgCGUguccacggCGCCg -3'
miRNA:   3'- aCUGUGaAAcGCGGCGGgC-GCA--------GCGG- -5'
24826 5' -58.4 NC_005284.1 + 33656 0.67 0.466205
Target:  5'- -cACGCgugaaGCGCUgGCCCGCGuacacgucuuucguaUCGCCg -3'
miRNA:   3'- acUGUGaaa--CGCGG-CGGGCGC---------------AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 33207 0.67 0.462295
Target:  5'- cGGCAUgccgcUGCGCgucgaaCGCCCGCG-CgGCCu -3'
miRNA:   3'- aCUGUGaa---ACGCG------GCGGGCGCaG-CGG- -5'
24826 5' -58.4 NC_005284.1 + 36500 0.67 0.512312
Target:  5'- gGACACUcaGCGCuCGCauaaggcaGCGUUGCa -3'
miRNA:   3'- aCUGUGAaaCGCG-GCGgg------CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 33460 0.67 0.462295
Target:  5'- cGACACgc-GCcCCGCCa--GUCGCCc -3'
miRNA:   3'- aCUGUGaaaCGcGGCGGgcgCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 16094 0.68 0.452599
Target:  5'- cGAUuCUcgGCGCCGCaCU-CGUUGCCg -3'
miRNA:   3'- aCUGuGAaaCGCGGCG-GGcGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 53955 0.68 0.452599
Target:  5'- cGGCGCUUgccggUGCGCUuguugagccaGCCgaaCGUCGCCa -3'
miRNA:   3'- aCUGUGAA-----ACGCGG----------CGGgc-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 11416 0.68 0.452599
Target:  5'- uUGACGCgcUGCGUCGaUCGCGaaaacCGCCu -3'
miRNA:   3'- -ACUGUGaaACGCGGCgGGCGCa----GCGG- -5'
24826 5' -58.4 NC_005284.1 + 54578 0.68 0.451636
Target:  5'- cGGCACaacGCGCUcccacauGcCCCGCGccUCGCCg -3'
miRNA:   3'- aCUGUGaaaCGCGG-------C-GGGCGC--AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 6975 0.68 0.443015
Target:  5'- -aGCACccaucgcGCGCCGCCaaGCGcUCGCCc -3'
miRNA:   3'- acUGUGaaa----CGCGGCGGg-CGC-AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 15951 0.68 0.433546
Target:  5'- cGGCGCgcgaCGCCgGCCCaCGuUCGCCg -3'
miRNA:   3'- aCUGUGaaacGCGG-CGGGcGC-AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 21886 0.68 0.433546
Target:  5'- cGACGCagcggUUGCGgaaCGCguuuuCgGCGUCGCCg -3'
miRNA:   3'- aCUGUGa----AACGCg--GCG-----GgCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 32917 0.68 0.433546
Target:  5'- cGAucauCGCUUcGuCGUCGCCCaacCGUCGCCu -3'
miRNA:   3'- aCU----GUGAAaC-GCGGCGGGc--GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 7708 0.68 0.443015
Target:  5'- gUGA-GCggUGCGCCgaaGCUCGUGcCGCCg -3'
miRNA:   3'- -ACUgUGaaACGCGG---CGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 31000 0.68 0.443015
Target:  5'- cUGGCGCUUgcCGCCGUgCGUgcggaaGUUGCCg -3'
miRNA:   3'- -ACUGUGAAacGCGGCGgGCG------CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 9787 0.68 0.452599
Target:  5'- cGuCGCaacgGCGCgCGCCaaCGUCGCCg -3'
miRNA:   3'- aCuGUGaaa-CGCG-GCGGgcGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.