Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24826 | 5' | -58.4 | NC_005284.1 | + | 7708 | 0.68 | 0.443015 |
Target: 5'- gUGA-GCggUGCGCCgaaGCUCGUGcCGCCg -3' miRNA: 3'- -ACUgUGaaACGCGG---CGGGCGCaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 31000 | 0.68 | 0.443015 |
Target: 5'- cUGGCGCUUgcCGCCGUgCGUgcggaaGUUGCCg -3' miRNA: 3'- -ACUGUGAAacGCGGCGgGCG------CAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 16094 | 0.68 | 0.452599 |
Target: 5'- cGAUuCUcgGCGCCGCaCU-CGUUGCCg -3' miRNA: 3'- aCUGuGAaaCGCGGCG-GGcGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 9787 | 0.68 | 0.452599 |
Target: 5'- cGuCGCaacgGCGCgCGCCaaCGUCGCCg -3' miRNA: 3'- aCuGUGaaa-CGCG-GCGGgcGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 35806 | 0.69 | 0.405863 |
Target: 5'- uUGAgcCUUU-CGUCGCCCGCGuagaucguugcgUCGCCg -3' miRNA: 3'- -ACUguGAAAcGCGGCGGGCGC------------AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 36760 | 0.69 | 0.370732 |
Target: 5'- -aGCGCUcgGCGagCGUgaCCGUGUCGCCg -3' miRNA: 3'- acUGUGAaaCGCg-GCG--GGCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 32875 | 0.69 | 0.370732 |
Target: 5'- -cGCGCUgauCGUCGCCgGCGaCGCCg -3' miRNA: 3'- acUGUGAaacGCGGCGGgCGCaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 9596 | 0.69 | 0.364801 |
Target: 5'- cGACACggccgucuucgaGCGUCuucacgaucuccuGCCCGaCGUCGCCg -3' miRNA: 3'- aCUGUGaaa---------CGCGG-------------CGGGC-GCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 9903 | 0.69 | 0.405863 |
Target: 5'- -aGCGCgccgaaGCGUCGCUCGCGcUCGCg -3' miRNA: 3'- acUGUGaaa---CGCGGCGGGCGC-AGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 31574 | 0.69 | 0.396885 |
Target: 5'- cGACACg--GCuccaCCGCCCGuCGUCGaCg -3' miRNA: 3'- aCUGUGaaaCGc---GGCGGGC-GCAGCgG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 48758 | 0.69 | 0.379318 |
Target: 5'- -cGCGCggcgUGCGCCGCgagUUGCGUUGCa -3' miRNA: 3'- acUGUGaa--ACGCGGCG---GGCGCAGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 30376 | 0.69 | 0.379318 |
Target: 5'- gGGCGa--UGCGCUcgGCCCGCGUgUGCUg -3' miRNA: 3'- aCUGUgaaACGCGG--CGGGCGCA-GCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 11161 | 0.69 | 0.370732 |
Target: 5'- cUGACGCagcucGCGCCGCggccgCCGCG-CGCg -3' miRNA: 3'- -ACUGUGaaa--CGCGGCG-----GGCGCaGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 13163 | 0.69 | 0.36228 |
Target: 5'- --cCGCUc-GCGUCGUCCGUGcCGCCa -3' miRNA: 3'- acuGUGAaaCGCGGCGGGCGCaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 54334 | 0.7 | 0.337735 |
Target: 5'- cGAC-Cag-GCGCUGCCgGC-UCGCCg -3' miRNA: 3'- aCUGuGaaaCGCGGCGGgCGcAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 13187 | 0.7 | 0.314423 |
Target: 5'- -cGCACUcgGCGCgGCCuCGCG-CGCg -3' miRNA: 3'- acUGUGAaaCGCGgCGG-GCGCaGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 36690 | 0.7 | 0.353962 |
Target: 5'- cGAUACUgcUGCGCCGCgaGC-UCGCg -3' miRNA: 3'- aCUGUGAa-ACGCGGCGggCGcAGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 21768 | 0.7 | 0.329827 |
Target: 5'- cUGGCACUga--GCgGCUgCGCGUCGCUg -3' miRNA: 3'- -ACUGUGAaacgCGgCGG-GCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 23279 | 0.7 | 0.31216 |
Target: 5'- aGGCGCgcgGUGCCGauaucggcguguauCCCgGCGUCGUCg -3' miRNA: 3'- aCUGUGaaaCGCGGC--------------GGG-CGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 38253 | 0.7 | 0.337735 |
Target: 5'- cGAUugUccugGUGCCGCCaGCG-CGCCc -3' miRNA: 3'- aCUGugAaa--CGCGGCGGgCGCaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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