Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24826 | 5' | -58.4 | NC_005284.1 | + | 21768 | 0.7 | 0.329827 |
Target: 5'- cUGGCACUga--GCgGCUgCGCGUCGCUg -3' miRNA: 3'- -ACUGUGAaacgCGgCGG-GCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 23279 | 0.7 | 0.31216 |
Target: 5'- aGGCGCgcgGUGCCGauaucggcguguauCCCgGCGUCGUCg -3' miRNA: 3'- aCUGUGaaaCGCGGC--------------GGG-CGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 45546 | 0.71 | 0.285264 |
Target: 5'- -cGCGCUcuaUGcCGCCGCguggCGCGUCGCCc -3' miRNA: 3'- acUGUGAa--AC-GCGGCGg---GCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 17829 | 0.71 | 0.292348 |
Target: 5'- gGACGCUUugUGCGCCGggacaggugaUCGCcGUUGCCg -3' miRNA: 3'- aCUGUGAA--ACGCGGCg---------GGCG-CAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 44367 | 0.72 | 0.251871 |
Target: 5'- cGAUAUgccgacUGCgcgucaucgGCCGCCCGCGaCGCCu -3' miRNA: 3'- aCUGUGaa----ACG---------CGGCGGGCGCaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 6939 | 0.72 | 0.251871 |
Target: 5'- gUGGC-CUccugUGCGCUuUCCGCGUCGUCa -3' miRNA: 3'- -ACUGuGAa---ACGCGGcGGGCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33279 | 0.72 | 0.245591 |
Target: 5'- cGACGCaa-GCGCCGgCCGCcaUGCCa -3' miRNA: 3'- aCUGUGaaaCGCGGCgGGCGcaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 4538 | 0.72 | 0.233422 |
Target: 5'- cUGACGCUUcaGCGUCGCCguuCGCGUCagGCUg -3' miRNA: 3'- -ACUGUGAAa-CGCGGCGG---GCGCAG--CGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 44154 | 0.72 | 0.264826 |
Target: 5'- -aGCGCUU--CGCCGCCgCuCGUCGCCg -3' miRNA: 3'- acUGUGAAacGCGGCGG-GcGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 31432 | 0.72 | 0.239442 |
Target: 5'- gGGCGacgUGCGCCG-CUGCGgcgCGCCg -3' miRNA: 3'- aCUGUgaaACGCGGCgGGCGCa--GCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 44507 | 0.73 | 0.199934 |
Target: 5'- cGACGuc--GCGCUGCUCGCGUUGUCg -3' miRNA: 3'- aCUGUgaaaCGCGGCGGGCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 32964 | 0.73 | 0.210605 |
Target: 5'- cGGCGCUggaaGCGCCGggcaCGcCGUCGCCa -3' miRNA: 3'- aCUGUGAaa--CGCGGCgg--GC-GCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 30935 | 0.73 | 0.216123 |
Target: 5'- gUGGCGCUUU-CGCCGCCgGCGaUCaCCc -3' miRNA: 3'- -ACUGUGAAAcGCGGCGGgCGC-AGcGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 10920 | 0.73 | 0.205209 |
Target: 5'- gGGCGCgaaugaUGCGCagGCCCGCauggccggccucGUCGCCg -3' miRNA: 3'- aCUGUGaa----ACGCGg-CGGGCG------------CAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33941 | 0.74 | 0.194776 |
Target: 5'- gGAUuuGCggaaGCGCCGCCCGC-UCGUCg -3' miRNA: 3'- aCUG--UGaaa-CGCGGCGGGCGcAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 44655 | 0.75 | 0.161845 |
Target: 5'- -cGCGCga-GCGCCGUCUGCGccgUCGCCg -3' miRNA: 3'- acUGUGaaaCGCGGCGGGCGC---AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 27857 | 0.77 | 0.110649 |
Target: 5'- aGACGac--GCGCCGCCCGgCGcaUCGCCg -3' miRNA: 3'- aCUGUgaaaCGCGGCGGGC-GC--AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 53664 | 0.78 | 0.104707 |
Target: 5'- cGACGCgc--CGUCGCCCGgGUUGCCa -3' miRNA: 3'- aCUGUGaaacGCGGCGGGCgCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 45233 | 0.79 | 0.086197 |
Target: 5'- -aGCGCUgccUGCGCCGCCuCGUGUUGCUu -3' miRNA: 3'- acUGUGAa--ACGCGGCGG-GCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 21832 | 0.8 | 0.072851 |
Target: 5'- cGGCGCUUccaGCGCCGCCgGCGUgggcgauggugcCGCCg -3' miRNA: 3'- aCUGUGAAa--CGCGGCGGgCGCA------------GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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