Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24826 | 5' | -58.4 | NC_005284.1 | + | 15784 | 0.68 | 0.414967 |
Target: 5'- gUGGCAacucGCGCaUGCgUUGCGUCGCCa -3' miRNA: 3'- -ACUGUgaaaCGCG-GCG-GGCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 53955 | 0.68 | 0.452599 |
Target: 5'- cGGCGCUUgccggUGCGCUuguugagccaGCCgaaCGUCGCCa -3' miRNA: 3'- aCUGUGAA-----ACGCGG----------CGGgc-GCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 11416 | 0.68 | 0.452599 |
Target: 5'- uUGACGCgcUGCGUCGaUCGCGaaaacCGCCu -3' miRNA: 3'- -ACUGUGaaACGCGGCgGGCGCa----GCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 6975 | 0.68 | 0.443015 |
Target: 5'- -aGCACccaucgcGCGCCGCCaaGCGcUCGCCc -3' miRNA: 3'- acUGUGaaa----CGCGGCGGg-CGC-AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 8069 | 0.68 | 0.433546 |
Target: 5'- -uGCugUUUuCGCUGCUCauugGCGUCGCCc -3' miRNA: 3'- acUGugAAAcGCGGCGGG----CGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 54578 | 0.68 | 0.451636 |
Target: 5'- cGGCACaacGCGCUcccacauGcCCCGCGccUCGCCg -3' miRNA: 3'- aCUGUGaaaCGCGG-------C-GGGCGC--AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 9787 | 0.68 | 0.452599 |
Target: 5'- cGuCGCaacgGCGCgCGCCaaCGUCGCCg -3' miRNA: 3'- aCuGUGaaa-CGCG-GCGGgcGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 16094 | 0.68 | 0.452599 |
Target: 5'- cGAUuCUcgGCGCCGCaCU-CGUUGCCg -3' miRNA: 3'- aCUGuGAaaCGCGGCG-GGcGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 31000 | 0.68 | 0.443015 |
Target: 5'- cUGGCGCUUgcCGCCGUgCGUgcggaaGUUGCCg -3' miRNA: 3'- -ACUGUGAAacGCGGCGgGCG------CAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 7708 | 0.68 | 0.443015 |
Target: 5'- gUGA-GCggUGCGCCgaaGCUCGUGcCGCCg -3' miRNA: 3'- -ACUgUGaaACGCGG---CGGGCGCaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 32917 | 0.68 | 0.433546 |
Target: 5'- cGAucauCGCUUcGuCGUCGCCCaacCGUCGCCu -3' miRNA: 3'- aCU----GUGAAaC-GCGGCGGGc--GCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 15951 | 0.68 | 0.433546 |
Target: 5'- cGGCGCgcgaCGCCgGCCCaCGuUCGCCg -3' miRNA: 3'- aCUGUGaaacGCGG-CGGGcGC-AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 21886 | 0.68 | 0.433546 |
Target: 5'- cGACGCagcggUUGCGgaaCGCguuuuCgGCGUCGCCg -3' miRNA: 3'- aCUGUGa----AACGCg--GCG-----GgCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 17940 | 0.67 | 0.4721 |
Target: 5'- aGGCGCcgacaauCGCCGCCgGCGaCGCUu -3' miRNA: 3'- aCUGUGaaac---GCGGCGGgCGCaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33207 | 0.67 | 0.462295 |
Target: 5'- cGGCAUgccgcUGCGCgucgaaCGCCCGCG-CgGCCu -3' miRNA: 3'- aCUGUGaa---ACGCG------GCGGGCGCaG-CGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33460 | 0.67 | 0.462295 |
Target: 5'- cGACACgc-GCcCCGCCa--GUCGCCc -3' miRNA: 3'- aCUGUGaaaCGcGGCGGgcgCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33656 | 0.67 | 0.466205 |
Target: 5'- -cACGCgugaaGCGCUgGCCCGCGuacacgucuuucguaUCGCCg -3' miRNA: 3'- acUGUGaaa--CGCGG-CGGGCGC---------------AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 5896 | 0.67 | 0.482008 |
Target: 5'- cGACACcUU-CGCCGCCgGgCGUguccacggCGCCg -3' miRNA: 3'- aCUGUGaAAcGCGGCGGgC-GCA--------GCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 5955 | 0.67 | 0.462295 |
Target: 5'- gGACGCcacggcugGCGCCGaUCCGauCGUCGCg -3' miRNA: 3'- aCUGUGaaa-----CGCGGC-GGGC--GCAGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 54717 | 0.67 | 0.512312 |
Target: 5'- gUGGCcCguccgucgUUGC-CCGCCCGgCGgaugCGCCg -3' miRNA: 3'- -ACUGuGa-------AACGcGGCGGGC-GCa---GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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