miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 23279 0.7 0.31216
Target:  5'- aGGCGCgcgGUGCCGauaucggcguguauCCCgGCGUCGUCg -3'
miRNA:   3'- aCUGUGaaaCGCGGC--------------GGG-CGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 31679 0.7 0.313667
Target:  5'- gGACGCUgucgGCccgucguuuCCGCCCccacaugcuaccaGCGUCGCCg -3'
miRNA:   3'- aCUGUGAaa--CGc--------GGCGGG-------------CGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 13187 0.7 0.314423
Target:  5'- -cGCACUcgGCGCgGCCuCGCG-CGCg -3'
miRNA:   3'- acUGUGAaaCGCGgCGG-GCGCaGCGg -5'
24826 5' -58.4 NC_005284.1 + 8175 0.7 0.314423
Target:  5'- aGACACUgaacgccCGCCGCUCgggacguucgGCGUUGCCc -3'
miRNA:   3'- aCUGUGAaac----GCGGCGGG----------CGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 21768 0.7 0.329827
Target:  5'- cUGGCACUga--GCgGCUgCGCGUCGCUg -3'
miRNA:   3'- -ACUGUGAaacgCGgCGG-GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 38253 0.7 0.337735
Target:  5'- cGAUugUccugGUGCCGCCaGCG-CGCCc -3'
miRNA:   3'- aCUGugAaa--CGCGGCGGgCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 54334 0.7 0.337735
Target:  5'- cGAC-Cag-GCGCUGCCgGC-UCGCCg -3'
miRNA:   3'- aCUGuGaaaCGCGGCGGgCGcAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 36690 0.7 0.353962
Target:  5'- cGAUACUgcUGCGCCGCgaGC-UCGCg -3'
miRNA:   3'- aCUGUGAa-ACGCGGCGggCGcAGCGg -5'
24826 5' -58.4 NC_005284.1 + 13163 0.69 0.36228
Target:  5'- --cCGCUc-GCGUCGUCCGUGcCGCCa -3'
miRNA:   3'- acuGUGAaaCGCGGCGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 9596 0.69 0.364801
Target:  5'- cGACACggccgucuucgaGCGUCuucacgaucuccuGCCCGaCGUCGCCg -3'
miRNA:   3'- aCUGUGaaa---------CGCGG-------------CGGGC-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 36760 0.69 0.370732
Target:  5'- -aGCGCUcgGCGagCGUgaCCGUGUCGCCg -3'
miRNA:   3'- acUGUGAaaCGCg-GCG--GGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 32875 0.69 0.370732
Target:  5'- -cGCGCUgauCGUCGCCgGCGaCGCCg -3'
miRNA:   3'- acUGUGAaacGCGGCGGgCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 11161 0.69 0.370732
Target:  5'- cUGACGCagcucGCGCCGCggccgCCGCG-CGCg -3'
miRNA:   3'- -ACUGUGaaa--CGCGGCG-----GGCGCaGCGg -5'
24826 5' -58.4 NC_005284.1 + 30376 0.69 0.379318
Target:  5'- gGGCGa--UGCGCUcgGCCCGCGUgUGCUg -3'
miRNA:   3'- aCUGUgaaACGCGG--CGGGCGCA-GCGG- -5'
24826 5' -58.4 NC_005284.1 + 48758 0.69 0.379318
Target:  5'- -cGCGCggcgUGCGCCGCgagUUGCGUUGCa -3'
miRNA:   3'- acUGUGaa--ACGCGGCG---GGCGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 31574 0.69 0.396885
Target:  5'- cGACACg--GCuccaCCGCCCGuCGUCGaCg -3'
miRNA:   3'- aCUGUGaaaCGc---GGCGGGC-GCAGCgG- -5'
24826 5' -58.4 NC_005284.1 + 35806 0.69 0.405863
Target:  5'- uUGAgcCUUU-CGUCGCCCGCGuagaucguugcgUCGCCg -3'
miRNA:   3'- -ACUguGAAAcGCGGCGGGCGC------------AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 9903 0.69 0.405863
Target:  5'- -aGCGCgccgaaGCGUCGCUCGCGcUCGCg -3'
miRNA:   3'- acUGUGaaa---CGCGGCGGGCGC-AGCGg -5'
24826 5' -58.4 NC_005284.1 + 46394 0.68 0.414051
Target:  5'- uUGAC-CUUUGCGCCcugcgacugaaacGCcgccgCCGCGaucaUCGCCg -3'
miRNA:   3'- -ACUGuGAAACGCGG-------------CG-----GGCGC----AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 15784 0.68 0.414967
Target:  5'- gUGGCAacucGCGCaUGCgUUGCGUCGCCa -3'
miRNA:   3'- -ACUGUgaaaCGCG-GCG-GGCGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.