miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 30935 0.73 0.216123
Target:  5'- gUGGCGCUUU-CGCCGCCgGCGaUCaCCc -3'
miRNA:   3'- -ACUGUGAAAcGCGGCGGgCGC-AGcGG- -5'
24826 5' -58.4 NC_005284.1 + 31000 0.68 0.443015
Target:  5'- cUGGCGCUUgcCGCCGUgCGUgcggaaGUUGCCg -3'
miRNA:   3'- -ACUGUGAAacGCGGCGgGCG------CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 31432 0.72 0.239442
Target:  5'- gGGCGacgUGCGCCG-CUGCGgcgCGCCg -3'
miRNA:   3'- aCUGUgaaACGCGGCgGGCGCa--GCGG- -5'
24826 5' -58.4 NC_005284.1 + 31574 0.69 0.396885
Target:  5'- cGACACg--GCuccaCCGCCCGuCGUCGaCg -3'
miRNA:   3'- aCUGUGaaaCGc---GGCGGGC-GCAGCgG- -5'
24826 5' -58.4 NC_005284.1 + 31679 0.7 0.313667
Target:  5'- gGACGCUgucgGCccgucguuuCCGCCCccacaugcuaccaGCGUCGCCg -3'
miRNA:   3'- aCUGUGAaa--CGc--------GGCGGG-------------CGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 32875 0.69 0.370732
Target:  5'- -cGCGCUgauCGUCGCCgGCGaCGCCg -3'
miRNA:   3'- acUGUGAaacGCGGCGGgCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 32917 0.68 0.433546
Target:  5'- cGAucauCGCUUcGuCGUCGCCCaacCGUCGCCu -3'
miRNA:   3'- aCU----GUGAAaC-GCGGCGGGc--GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 32964 0.73 0.210605
Target:  5'- cGGCGCUggaaGCGCCGggcaCGcCGUCGCCa -3'
miRNA:   3'- aCUGUGAaa--CGCGGCgg--GC-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 33207 0.67 0.462295
Target:  5'- cGGCAUgccgcUGCGCgucgaaCGCCCGCG-CgGCCu -3'
miRNA:   3'- aCUGUGaa---ACGCG------GCGGGCGCaG-CGG- -5'
24826 5' -58.4 NC_005284.1 + 33279 0.72 0.245591
Target:  5'- cGACGCaa-GCGCCGgCCGCcaUGCCa -3'
miRNA:   3'- aCUGUGaaaCGCGGCgGGCGcaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 33460 0.67 0.462295
Target:  5'- cGACACgc-GCcCCGCCa--GUCGCCc -3'
miRNA:   3'- aCUGUGaaaCGcGGCGGgcgCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 33656 0.67 0.466205
Target:  5'- -cACGCgugaaGCGCUgGCCCGCGuacacgucuuucguaUCGCCg -3'
miRNA:   3'- acUGUGaaa--CGCGG-CGGGCGC---------------AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 33941 0.74 0.194776
Target:  5'- gGAUuuGCggaaGCGCCGCCCGC-UCGUCg -3'
miRNA:   3'- aCUG--UGaaa-CGCGGCGGGCGcAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 34534 0.68 0.414967
Target:  5'- aGGCGCaccgUGUagGuCCGCCCGuCGUUGCUa -3'
miRNA:   3'- aCUGUGaa--ACG--C-GGCGGGC-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 35806 0.69 0.405863
Target:  5'- uUGAgcCUUU-CGUCGCCCGCGuagaucguugcgUCGCCg -3'
miRNA:   3'- -ACUguGAAAcGCGGCGGGCGC------------AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 36500 0.67 0.512312
Target:  5'- gGACACUcaGCGCuCGCauaaggcaGCGUUGCa -3'
miRNA:   3'- aCUGUGAaaCGCG-GCGgg------CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 36690 0.7 0.353962
Target:  5'- cGAUACUgcUGCGCCGCgaGC-UCGCg -3'
miRNA:   3'- aCUGUGAa-ACGCGGCGggCGcAGCGg -5'
24826 5' -58.4 NC_005284.1 + 36760 0.69 0.370732
Target:  5'- -aGCGCUcgGCGagCGUgaCCGUGUCGCCg -3'
miRNA:   3'- acUGUGAaaCGCg-GCG--GGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 37379 0.66 0.522589
Target:  5'- uUGACGCcgcgGuCGUCGCCguaGCGUUGCa -3'
miRNA:   3'- -ACUGUGaaa-C-GCGGCGGg--CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 38253 0.7 0.337735
Target:  5'- cGAUugUccugGUGCCGCCaGCG-CGCCc -3'
miRNA:   3'- aCUGugAaa--CGCGGCGGgCGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.