Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24826 | 5' | -58.4 | NC_005284.1 | + | 41802 | 0.66 | 0.558081 |
Target: 5'- cGACGCgguugUUGuCGCCGCCacuuccgcugggugGC-UCGCCc -3' miRNA: 3'- aCUGUGa----AAC-GCGGCGGg-------------CGcAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 41039 | 0.67 | 0.482008 |
Target: 5'- cGcAUACUgcGCGCCGacguuuCUCGCGgggCGCCg -3' miRNA: 3'- aC-UGUGAaaCGCGGC------GGGCGCa--GCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 38253 | 0.7 | 0.337735 |
Target: 5'- cGAUugUccugGUGCCGCCaGCG-CGCCc -3' miRNA: 3'- aCUGugAaa--CGCGGCGGgCGCaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 37379 | 0.66 | 0.522589 |
Target: 5'- uUGACGCcgcgGuCGUCGCCguaGCGUUGCa -3' miRNA: 3'- -ACUGUGaaa-C-GCGGCGGg--CGCAGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 36760 | 0.69 | 0.370732 |
Target: 5'- -aGCGCUcgGCGagCGUgaCCGUGUCGCCg -3' miRNA: 3'- acUGUGAaaCGCg-GCG--GGCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 36690 | 0.7 | 0.353962 |
Target: 5'- cGAUACUgcUGCGCCGCgaGC-UCGCg -3' miRNA: 3'- aCUGUGAa-ACGCGGCGggCGcAGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 36500 | 0.67 | 0.512312 |
Target: 5'- gGACACUcaGCGCuCGCauaaggcaGCGUUGCa -3' miRNA: 3'- aCUGUGAaaCGCG-GCGgg------CGCAGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 35806 | 0.69 | 0.405863 |
Target: 5'- uUGAgcCUUU-CGUCGCCCGCGuagaucguugcgUCGCCg -3' miRNA: 3'- -ACUguGAAAcGCGGCGGGCGC------------AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 34534 | 0.68 | 0.414967 |
Target: 5'- aGGCGCaccgUGUagGuCCGCCCGuCGUUGCUa -3' miRNA: 3'- aCUGUGaa--ACG--C-GGCGGGC-GCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33941 | 0.74 | 0.194776 |
Target: 5'- gGAUuuGCggaaGCGCCGCCCGC-UCGUCg -3' miRNA: 3'- aCUG--UGaaa-CGCGGCGGGCGcAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33656 | 0.67 | 0.466205 |
Target: 5'- -cACGCgugaaGCGCUgGCCCGCGuacacgucuuucguaUCGCCg -3' miRNA: 3'- acUGUGaaa--CGCGG-CGGGCGC---------------AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33460 | 0.67 | 0.462295 |
Target: 5'- cGACACgc-GCcCCGCCa--GUCGCCc -3' miRNA: 3'- aCUGUGaaaCGcGGCGGgcgCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33279 | 0.72 | 0.245591 |
Target: 5'- cGACGCaa-GCGCCGgCCGCcaUGCCa -3' miRNA: 3'- aCUGUGaaaCGCGGCgGGCGcaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33207 | 0.67 | 0.462295 |
Target: 5'- cGGCAUgccgcUGCGCgucgaaCGCCCGCG-CgGCCu -3' miRNA: 3'- aCUGUGaa---ACGCG------GCGGGCGCaG-CGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 32964 | 0.73 | 0.210605 |
Target: 5'- cGGCGCUggaaGCGCCGggcaCGcCGUCGCCa -3' miRNA: 3'- aCUGUGAaa--CGCGGCgg--GC-GCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 32917 | 0.68 | 0.433546 |
Target: 5'- cGAucauCGCUUcGuCGUCGCCCaacCGUCGCCu -3' miRNA: 3'- aCU----GUGAAaC-GCGGCGGGc--GCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 32875 | 0.69 | 0.370732 |
Target: 5'- -cGCGCUgauCGUCGCCgGCGaCGCCg -3' miRNA: 3'- acUGUGAaacGCGGCGGgCGCaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 31679 | 0.7 | 0.313667 |
Target: 5'- gGACGCUgucgGCccgucguuuCCGCCCccacaugcuaccaGCGUCGCCg -3' miRNA: 3'- aCUGUGAaa--CGc--------GGCGGG-------------CGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 31574 | 0.69 | 0.396885 |
Target: 5'- cGACACg--GCuccaCCGCCCGuCGUCGaCg -3' miRNA: 3'- aCUGUGaaaCGc---GGCGGGC-GCAGCgG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 31432 | 0.72 | 0.239442 |
Target: 5'- gGGCGacgUGCGCCG-CUGCGgcgCGCCg -3' miRNA: 3'- aCUGUgaaACGCGGCgGGCGCa--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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