Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24826 | 5' | -58.4 | NC_005284.1 | + | 13187 | 0.7 | 0.314423 |
Target: 5'- -cGCACUcgGCGCgGCCuCGCG-CGCg -3' miRNA: 3'- acUGUGAaaCGCGgCGG-GCGCaGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 13163 | 0.69 | 0.36228 |
Target: 5'- --cCGCUc-GCGUCGUCCGUGcCGCCa -3' miRNA: 3'- acuGUGAaaCGCGGCGGGCGCaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 11753 | 0.66 | 0.575026 |
Target: 5'- cGGCACgcUGgGuUCGCCCGaguacaUCGCCg -3' miRNA: 3'- aCUGUGaaACgC-GGCGGGCgc----AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 11416 | 0.68 | 0.452599 |
Target: 5'- uUGACGCgcUGCGUCGaUCGCGaaaacCGCCu -3' miRNA: 3'- -ACUGUGaaACGCGGCgGGCGCa----GCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 11161 | 0.69 | 0.370732 |
Target: 5'- cUGACGCagcucGCGCCGCggccgCCGCG-CGCg -3' miRNA: 3'- -ACUGUGaaa--CGCGGCG-----GGCGCaGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 10920 | 0.73 | 0.205209 |
Target: 5'- gGGCGCgaaugaUGCGCagGCCCGCauggccggccucGUCGCCg -3' miRNA: 3'- aCUGUGaa----ACGCGg-CGGGCG------------CAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 9903 | 0.69 | 0.405863 |
Target: 5'- -aGCGCgccgaaGCGUCGCUCGCGcUCGCg -3' miRNA: 3'- acUGUGaaa---CGCGGCGGGCGC-AGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 9787 | 0.68 | 0.452599 |
Target: 5'- cGuCGCaacgGCGCgCGCCaaCGUCGCCg -3' miRNA: 3'- aCuGUGaaa-CGCG-GCGGgcGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 9596 | 0.69 | 0.364801 |
Target: 5'- cGACACggccgucuucgaGCGUCuucacgaucuccuGCCCGaCGUCGCCg -3' miRNA: 3'- aCUGUGaaa---------CGCGG-------------CGGGC-GCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 8175 | 0.7 | 0.314423 |
Target: 5'- aGACACUgaacgccCGCCGCUCgggacguucgGCGUUGCCc -3' miRNA: 3'- aCUGUGAaac----GCGGCGGG----------CGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 8127 | 0.67 | 0.502119 |
Target: 5'- cUGuCGCUUgccguuCGCCgucuuGCCgCGUGUCGCCa -3' miRNA: 3'- -ACuGUGAAac----GCGG-----CGG-GCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 8069 | 0.68 | 0.433546 |
Target: 5'- -uGCugUUUuCGCUGCUCauugGCGUCGCCc -3' miRNA: 3'- acUGugAAAcGCGGCGGG----CGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 7708 | 0.68 | 0.443015 |
Target: 5'- gUGA-GCggUGCGCCgaaGCUCGUGcCGCCg -3' miRNA: 3'- -ACUgUGaaACGCGG---CGGGCGCaGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 6975 | 0.68 | 0.443015 |
Target: 5'- -aGCACccaucgcGCGCCGCCaaGCGcUCGCCc -3' miRNA: 3'- acUGUGaaa----CGCGGCGGg-CGC-AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 6939 | 0.72 | 0.251871 |
Target: 5'- gUGGC-CUccugUGCGCUuUCCGCGUCGUCa -3' miRNA: 3'- -ACUGuGAa---ACGCGGcGGGCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 6774 | 0.67 | 0.512312 |
Target: 5'- cGACACggucacGCGCgucaCGCCCGCGaauucCGCa -3' miRNA: 3'- aCUGUGaaa---CGCG----GCGGGCGCa----GCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 6541 | 0.66 | 0.575026 |
Target: 5'- cGGCAac--GCGCCGUCaGCGUCaGUCu -3' miRNA: 3'- aCUGUgaaaCGCGGCGGgCGCAG-CGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 5955 | 0.67 | 0.462295 |
Target: 5'- gGACGCcacggcugGCGCCGaUCCGauCGUCGCg -3' miRNA: 3'- aCUGUGaaa-----CGCGGC-GGGC--GCAGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 5896 | 0.67 | 0.482008 |
Target: 5'- cGACACcUU-CGCCGCCgGgCGUguccacggCGCCg -3' miRNA: 3'- aCUGUGaAAcGCGGCGGgC-GCA--------GCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 4538 | 0.72 | 0.233422 |
Target: 5'- cUGACGCUUcaGCGUCGCCguuCGCGUCagGCUg -3' miRNA: 3'- -ACUGUGAAa-CGCGGCGG---GCGCAG--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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