miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 10920 0.73 0.205209
Target:  5'- gGGCGCgaaugaUGCGCagGCCCGCauggccggccucGUCGCCg -3'
miRNA:   3'- aCUGUGaa----ACGCGg-CGGGCG------------CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 30935 0.73 0.216123
Target:  5'- gUGGCGCUUU-CGCCGCCgGCGaUCaCCc -3'
miRNA:   3'- -ACUGUGAAAcGCGGCGGgCGC-AGcGG- -5'
24826 5' -58.4 NC_005284.1 + 31432 0.72 0.239442
Target:  5'- gGGCGacgUGCGCCG-CUGCGgcgCGCCg -3'
miRNA:   3'- aCUGUgaaACGCGGCgGGCGCa--GCGG- -5'
24826 5' -58.4 NC_005284.1 + 45546 0.71 0.285264
Target:  5'- -cGCGCUcuaUGcCGCCGCguggCGCGUCGCCc -3'
miRNA:   3'- acUGUGAa--AC-GCGGCGg---GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 17829 0.71 0.292348
Target:  5'- gGACGCUUugUGCGCCGggacaggugaUCGCcGUUGCCg -3'
miRNA:   3'- aCUGUGAA--ACGCGGCg---------GGCG-CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 23279 0.7 0.31216
Target:  5'- aGGCGCgcgGUGCCGauaucggcguguauCCCgGCGUCGUCg -3'
miRNA:   3'- aCUGUGaaaCGCGGC--------------GGG-CGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 21768 0.7 0.329827
Target:  5'- cUGGCACUga--GCgGCUgCGCGUCGCUg -3'
miRNA:   3'- -ACUGUGAaacgCGgCGG-GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 9903 0.69 0.405863
Target:  5'- -aGCGCgccgaaGCGUCGCUCGCGcUCGCg -3'
miRNA:   3'- acUGUGaaa---CGCGGCGGGCGC-AGCGg -5'
24826 5' -58.4 NC_005284.1 + 48758 0.69 0.379318
Target:  5'- -cGCGCggcgUGCGCCGCgagUUGCGUUGCa -3'
miRNA:   3'- acUGUGaa--ACGCGGCG---GGCGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 30376 0.69 0.379318
Target:  5'- gGGCGa--UGCGCUcgGCCCGCGUgUGCUg -3'
miRNA:   3'- aCUGUgaaACGCGG--CGGGCGCA-GCGG- -5'
24826 5' -58.4 NC_005284.1 + 11161 0.69 0.370732
Target:  5'- cUGACGCagcucGCGCCGCggccgCCGCG-CGCg -3'
miRNA:   3'- -ACUGUGaaa--CGCGGCG-----GGCGCaGCGg -5'
24826 5' -58.4 NC_005284.1 + 13163 0.69 0.36228
Target:  5'- --cCGCUc-GCGUCGUCCGUGcCGCCa -3'
miRNA:   3'- acuGUGAaaCGCGGCGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 38253 0.7 0.337735
Target:  5'- cGAUugUccugGUGCCGCCaGCG-CGCCc -3'
miRNA:   3'- aCUGugAaa--CGCGGCGGgCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 22105 0.66 0.553867
Target:  5'- uUGGCGC-UUGCGguCCGCUgGCcccCGCCg -3'
miRNA:   3'- -ACUGUGaAACGC--GGCGGgCGca-GCGG- -5'
24826 5' -58.4 NC_005284.1 + 41802 0.66 0.558081
Target:  5'- cGACGCgguugUUGuCGCCGCCacuuccgcugggugGC-UCGCCc -3'
miRNA:   3'- aCUGUGa----AAC-GCGGCGGg-------------CGcAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 26771 0.66 0.56442
Target:  5'- cUGGCGCUgcaaccaUGUCGCCCGCGggauagaGCUg -3'
miRNA:   3'- -ACUGUGAaac----GCGGCGGGCGCag-----CGG- -5'
24826 5' -58.4 NC_005284.1 + 30215 0.66 0.575026
Target:  5'- gUGcCACUgcgUGUaGCCGUCgGCGUCggucugGCCg -3'
miRNA:   3'- -ACuGUGAa--ACG-CGGCGGgCGCAG------CGG- -5'
24826 5' -58.4 NC_005284.1 + 50307 0.66 0.575026
Target:  5'- cGGCGCUac-CGCCGCC-GCGa-GCCa -3'
miRNA:   3'- aCUGUGAaacGCGGCGGgCGCagCGG- -5'
24826 5' -58.4 NC_005284.1 + 272 0.66 0.575026
Target:  5'- cGGCGCaagaUGCGCUGCCUGaucuuGUC-CCa -3'
miRNA:   3'- aCUGUGaa--ACGCGGCGGGCg----CAGcGG- -5'
24826 5' -58.4 NC_005284.1 + 44334 1.12 0.000302
Target:  5'- aUGACACUUUGCGCCGCCCGCGUCGCCa -3'
miRNA:   3'- -ACUGUGAAACGCGGCGGGCGCAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.