Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24826 | 5' | -58.4 | NC_005284.1 | + | 8069 | 0.68 | 0.433546 |
Target: 5'- -uGCugUUUuCGCUGCUCauugGCGUCGCCc -3' miRNA: 3'- acUGugAAAcGCGGCGGG----CGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 6975 | 0.68 | 0.443015 |
Target: 5'- -aGCACccaucgcGCGCCGCCaaGCGcUCGCCc -3' miRNA: 3'- acUGUGaaa----CGCGGCGGg-CGC-AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33460 | 0.67 | 0.462295 |
Target: 5'- cGACACgc-GCcCCGCCa--GUCGCCc -3' miRNA: 3'- aCUGUGaaaCGcGGCGGgcgCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 6774 | 0.67 | 0.512312 |
Target: 5'- cGACACggucacGCGCgucaCGCCCGCGaauucCGCa -3' miRNA: 3'- aCUGUGaaa---CGCG----GCGGGCGCa----GCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 8175 | 0.7 | 0.314423 |
Target: 5'- aGACACUgaacgccCGCCGCUCgggacguucgGCGUUGCCc -3' miRNA: 3'- aCUGUGAaac----GCGGCGGG----------CGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 31574 | 0.69 | 0.396885 |
Target: 5'- cGACACg--GCuccaCCGCCCGuCGUCGaCg -3' miRNA: 3'- aCUGUGaaaCGc---GGCGGGC-GCAGCgG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 11416 | 0.68 | 0.452599 |
Target: 5'- uUGACGCgcUGCGUCGaUCGCGaaaacCGCCu -3' miRNA: 3'- -ACUGUGaaACGCGGCgGGCGCa----GCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 51226 | 0.67 | 0.512312 |
Target: 5'- aGGCACggaccUUGUaGCCGCCUuuaccguucuuGCGUUGCa -3' miRNA: 3'- aCUGUGa----AACG-CGGCGGG-----------CGCAGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 35806 | 0.69 | 0.405863 |
Target: 5'- uUGAgcCUUU-CGUCGCCCGCGuagaucguugcgUCGCCg -3' miRNA: 3'- -ACUguGAAAcGCGGCGGGCGC------------AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 23366 | 0.66 | 0.522589 |
Target: 5'- cGGCGCa---CGUCGCCCGCGaacuggCGCa -3' miRNA: 3'- aCUGUGaaacGCGGCGGGCGCa-----GCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 54578 | 0.68 | 0.451636 |
Target: 5'- cGGCACaacGCGCUcccacauGcCCCGCGccUCGCCg -3' miRNA: 3'- aCUGUGaaaCGCGG-------C-GGGCGC--AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 15784 | 0.68 | 0.414967 |
Target: 5'- gUGGCAacucGCGCaUGCgUUGCGUCGCCa -3' miRNA: 3'- -ACUGUgaaaCGCG-GCG-GGCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 53955 | 0.68 | 0.452599 |
Target: 5'- cGGCGCUUgccggUGCGCUuguugagccaGCCgaaCGUCGCCa -3' miRNA: 3'- aCUGUGAA-----ACGCGG----------CGGgc-GCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33207 | 0.67 | 0.462295 |
Target: 5'- cGGCAUgccgcUGCGCgucgaaCGCCCGCG-CgGCCu -3' miRNA: 3'- aCUGUGaa---ACGCG------GCGGGCGCaG-CGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 33656 | 0.67 | 0.466205 |
Target: 5'- -cACGCgugaaGCGCUgGCCCGCGuacacgucuuucguaUCGCCg -3' miRNA: 3'- acUGUGaaa--CGCGG-CGGGCGC---------------AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 43293 | 0.67 | 0.512312 |
Target: 5'- cGACGCUUgcuCGUacauCCCGCGaaUCGCCu -3' miRNA: 3'- aCUGUGAAac-GCGgc--GGGCGC--AGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 6939 | 0.72 | 0.251871 |
Target: 5'- gUGGC-CUccugUGCGCUuUCCGCGUCGUCa -3' miRNA: 3'- -ACUGuGAa---ACGCGGcGGGCGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 31679 | 0.7 | 0.313667 |
Target: 5'- gGACGCUgucgGCccgucguuuCCGCCCccacaugcuaccaGCGUCGCCg -3' miRNA: 3'- aCUGUGAaa--CGc--------GGCGGG-------------CGCAGCGG- -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 36690 | 0.7 | 0.353962 |
Target: 5'- cGAUACUgcUGCGCCGCgaGC-UCGCg -3' miRNA: 3'- aCUGUGAa-ACGCGGCGggCGcAGCGg -5' |
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24826 | 5' | -58.4 | NC_005284.1 | + | 36760 | 0.69 | 0.370732 |
Target: 5'- -aGCGCUcgGCGagCGUgaCCGUGUCGCCg -3' miRNA: 3'- acUGUGAaaCGCg-GCG--GGCGCAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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