miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 27857 0.77 0.110649
Target:  5'- aGACGac--GCGCCGCCCGgCGcaUCGCCg -3'
miRNA:   3'- aCUGUgaaaCGCGGCGGGC-GC--AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 32875 0.69 0.370732
Target:  5'- -cGCGCUgauCGUCGCCgGCGaCGCCg -3'
miRNA:   3'- acUGUGAaacGCGGCGGgCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 45233 0.79 0.086197
Target:  5'- -aGCGCUgccUGCGCCGCCuCGUGUUGCUu -3'
miRNA:   3'- acUGUGAa--ACGCGGCGG-GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 9596 0.69 0.364801
Target:  5'- cGACACggccgucuucgaGCGUCuucacgaucuccuGCCCGaCGUCGCCg -3'
miRNA:   3'- aCUGUGaaa---------CGCGG-------------CGGGC-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 33279 0.72 0.245591
Target:  5'- cGACGCaa-GCGCCGgCCGCcaUGCCa -3'
miRNA:   3'- aCUGUGaaaCGCGGCgGGCGcaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 4538 0.72 0.233422
Target:  5'- cUGACGCUUcaGCGUCGCCguuCGCGUCagGCUg -3'
miRNA:   3'- -ACUGUGAAa-CGCGGCGG---GCGCAG--CGG- -5'
24826 5' -58.4 NC_005284.1 + 45299 0.85 0.031887
Target:  5'- -cACGCUgu-CGCCGCCUGCGUCGCCg -3'
miRNA:   3'- acUGUGAaacGCGGCGGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 26771 0.66 0.56442
Target:  5'- cUGGCGCUgcaaccaUGUCGCCCGCGggauagaGCUg -3'
miRNA:   3'- -ACUGUGAaac----GCGGCGGGCGCag-----CGG- -5'
24826 5' -58.4 NC_005284.1 + 53664 0.78 0.104707
Target:  5'- cGACGCgc--CGUCGCCCGgGUUGCCa -3'
miRNA:   3'- aCUGUGaaacGCGGCGGGCgCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 17829 0.71 0.292348
Target:  5'- gGACGCUUugUGCGCCGggacaggugaUCGCcGUUGCCg -3'
miRNA:   3'- aCUGUGAA--ACGCGGCg---------GGCG-CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 42266 0.66 0.543373
Target:  5'- gGGCGagugUGCGCCGgUCGUcgagGUCGUCa -3'
miRNA:   3'- aCUGUgaa-ACGCGGCgGGCG----CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 30376 0.69 0.379318
Target:  5'- gGGCGa--UGCGCUcgGCCCGCGUgUGCUg -3'
miRNA:   3'- aCUGUgaaACGCGG--CGGGCGCA-GCGG- -5'
24826 5' -58.4 NC_005284.1 + 20814 0.66 0.532945
Target:  5'- -aGCAUa--GCGUCGgUCGCGUCGUCg -3'
miRNA:   3'- acUGUGaaaCGCGGCgGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 37379 0.66 0.522589
Target:  5'- uUGACGCcgcgGuCGUCGCCguaGCGUUGCa -3'
miRNA:   3'- -ACUGUGaaa-C-GCGGCGGg--CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 54717 0.67 0.512312
Target:  5'- gUGGCcCguccgucgUUGC-CCGCCCGgCGgaugCGCCg -3'
miRNA:   3'- -ACUGuGa-------AACGcGGCGGGC-GCa---GCGG- -5'
24826 5' -58.4 NC_005284.1 + 36500 0.67 0.512312
Target:  5'- gGACACUcaGCGCuCGCauaaggcaGCGUUGCa -3'
miRNA:   3'- aCUGUGAaaCGCG-GCGgg------CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 41039 0.67 0.482008
Target:  5'- cGcAUACUgcGCGCCGacguuuCUCGCGgggCGCCg -3'
miRNA:   3'- aC-UGUGAaaCGCGGC------GGGCGCa--GCGG- -5'
24826 5' -58.4 NC_005284.1 + 17940 0.67 0.4721
Target:  5'- aGGCGCcgacaauCGCCGCCgGCGaCGCUu -3'
miRNA:   3'- aCUGUGaaac---GCGGCGGgCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 9903 0.69 0.405863
Target:  5'- -aGCGCgccgaaGCGUCGCUCGCGcUCGCg -3'
miRNA:   3'- acUGUGaaa---CGCGGCGGGCGC-AGCGg -5'
24826 5' -58.4 NC_005284.1 + 48758 0.69 0.379318
Target:  5'- -cGCGCggcgUGCGCCGCgagUUGCGUUGCa -3'
miRNA:   3'- acUGUGaa--ACGCGGCG---GGCGCAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.