miRNA display CGI


Results 61 - 80 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 10920 0.73 0.205209
Target:  5'- gGGCGCgaaugaUGCGCagGCCCGCauggccggccucGUCGCCg -3'
miRNA:   3'- aCUGUGaa----ACGCGg-CGGGCG------------CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 33941 0.74 0.194776
Target:  5'- gGAUuuGCggaaGCGCCGCCCGC-UCGUCg -3'
miRNA:   3'- aCUG--UGaaa-CGCGGCGGGCGcAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 13163 0.69 0.36228
Target:  5'- --cCGCUc-GCGUCGUCCGUGcCGCCa -3'
miRNA:   3'- acuGUGAaaCGCGGCGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 21886 0.68 0.433546
Target:  5'- cGACGCagcggUUGCGgaaCGCguuuuCgGCGUCGCCg -3'
miRNA:   3'- aCUGUGa----AACGCg--GCG-----GgCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 15951 0.68 0.433546
Target:  5'- cGGCGCgcgaCGCCgGCCCaCGuUCGCCg -3'
miRNA:   3'- aCUGUGaaacGCGG-CGGGcGC-AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 14600 0.66 0.558081
Target:  5'- cGGCGCgaaaguguuccgGCGCCgaacGCUCGCG-CGCUa -3'
miRNA:   3'- aCUGUGaaa---------CGCGG----CGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 1217 0.66 0.532945
Target:  5'- cGGCAUgg-GCGCgCGCCgGCa--GCCg -3'
miRNA:   3'- aCUGUGaaaCGCG-GCGGgCGcagCGG- -5'
24826 5' -58.4 NC_005284.1 + 42266 0.66 0.543373
Target:  5'- gGGCGagugUGCGCCGgUCGUcgagGUCGUCa -3'
miRNA:   3'- aCUGUgaa-ACGCGGCgGGCG----CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 20814 0.66 0.532945
Target:  5'- -aGCAUa--GCGUCGgUCGCGUCGUCg -3'
miRNA:   3'- acUGUGaaaCGCGGCgGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 37379 0.66 0.522589
Target:  5'- uUGACGCcgcgGuCGUCGCCguaGCGUUGCa -3'
miRNA:   3'- -ACUGUGaaa-C-GCGGCGGg--CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 54717 0.67 0.512312
Target:  5'- gUGGCcCguccgucgUUGC-CCGCCCGgCGgaugCGCCg -3'
miRNA:   3'- -ACUGuGa-------AACGcGGCGGGC-GCa---GCGG- -5'
24826 5' -58.4 NC_005284.1 + 36500 0.67 0.512312
Target:  5'- gGACACUcaGCGCuCGCauaaggcaGCGUUGCa -3'
miRNA:   3'- aCUGUGAaaCGCG-GCGgg------CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 41039 0.67 0.482008
Target:  5'- cGcAUACUgcGCGCCGacguuuCUCGCGgggCGCCg -3'
miRNA:   3'- aC-UGUGAaaCGCGGC------GGGCGCa--GCGG- -5'
24826 5' -58.4 NC_005284.1 + 17940 0.67 0.4721
Target:  5'- aGGCGCcgacaauCGCCGCCgGCGaCGCUu -3'
miRNA:   3'- aCUGUGaaac---GCGGCGGgCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 5955 0.67 0.462295
Target:  5'- gGACGCcacggcugGCGCCGaUCCGauCGUCGCg -3'
miRNA:   3'- aCUGUGaaa-----CGCGGC-GGGC--GCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 9787 0.68 0.452599
Target:  5'- cGuCGCaacgGCGCgCGCCaaCGUCGCCg -3'
miRNA:   3'- aCuGUGaaa-CGCG-GCGGgcGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 16094 0.68 0.452599
Target:  5'- cGAUuCUcgGCGCCGCaCU-CGUUGCCg -3'
miRNA:   3'- aCUGuGAaaCGCGGCG-GGcGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 31000 0.68 0.443015
Target:  5'- cUGGCGCUUgcCGCCGUgCGUgcggaaGUUGCCg -3'
miRNA:   3'- -ACUGUGAAacGCGGCGgGCG------CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 7708 0.68 0.443015
Target:  5'- gUGA-GCggUGCGCCgaaGCUCGUGcCGCCg -3'
miRNA:   3'- -ACUgUGaaACGCGG---CGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 32917 0.68 0.433546
Target:  5'- cGAucauCGCUUcGuCGUCGCCCaacCGUCGCCu -3'
miRNA:   3'- aCU----GUGAAaC-GCGGCGGGc--GCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.