miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 272 0.66 0.575026
Target:  5'- cGGCGCaagaUGCGCUGCCUGaucuuGUC-CCa -3'
miRNA:   3'- aCUGUGaa--ACGCGGCGGGCg----CAGcGG- -5'
24826 5' -58.4 NC_005284.1 + 1217 0.66 0.532945
Target:  5'- cGGCAUgg-GCGCgCGCCgGCa--GCCg -3'
miRNA:   3'- aCUGUGaaaCGCG-GCGGgCGcagCGG- -5'
24826 5' -58.4 NC_005284.1 + 4538 0.72 0.233422
Target:  5'- cUGACGCUUcaGCGUCGCCguuCGCGUCagGCUg -3'
miRNA:   3'- -ACUGUGAAa-CGCGGCGG---GCGCAG--CGG- -5'
24826 5' -58.4 NC_005284.1 + 5896 0.67 0.482008
Target:  5'- cGACACcUU-CGCCGCCgGgCGUguccacggCGCCg -3'
miRNA:   3'- aCUGUGaAAcGCGGCGGgC-GCA--------GCGG- -5'
24826 5' -58.4 NC_005284.1 + 5955 0.67 0.462295
Target:  5'- gGACGCcacggcugGCGCCGaUCCGauCGUCGCg -3'
miRNA:   3'- aCUGUGaaa-----CGCGGC-GGGC--GCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 6541 0.66 0.575026
Target:  5'- cGGCAac--GCGCCGUCaGCGUCaGUCu -3'
miRNA:   3'- aCUGUgaaaCGCGGCGGgCGCAG-CGG- -5'
24826 5' -58.4 NC_005284.1 + 6774 0.67 0.512312
Target:  5'- cGACACggucacGCGCgucaCGCCCGCGaauucCGCa -3'
miRNA:   3'- aCUGUGaaa---CGCG----GCGGGCGCa----GCGg -5'
24826 5' -58.4 NC_005284.1 + 6939 0.72 0.251871
Target:  5'- gUGGC-CUccugUGCGCUuUCCGCGUCGUCa -3'
miRNA:   3'- -ACUGuGAa---ACGCGGcGGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 6975 0.68 0.443015
Target:  5'- -aGCACccaucgcGCGCCGCCaaGCGcUCGCCc -3'
miRNA:   3'- acUGUGaaa----CGCGGCGGg-CGC-AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 7708 0.68 0.443015
Target:  5'- gUGA-GCggUGCGCCgaaGCUCGUGcCGCCg -3'
miRNA:   3'- -ACUgUGaaACGCGG---CGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 8069 0.68 0.433546
Target:  5'- -uGCugUUUuCGCUGCUCauugGCGUCGCCc -3'
miRNA:   3'- acUGugAAAcGCGGCGGG----CGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 8127 0.67 0.502119
Target:  5'- cUGuCGCUUgccguuCGCCgucuuGCCgCGUGUCGCCa -3'
miRNA:   3'- -ACuGUGAAac----GCGG-----CGG-GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 8175 0.7 0.314423
Target:  5'- aGACACUgaacgccCGCCGCUCgggacguucgGCGUUGCCc -3'
miRNA:   3'- aCUGUGAaac----GCGGCGGG----------CGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 9596 0.69 0.364801
Target:  5'- cGACACggccgucuucgaGCGUCuucacgaucuccuGCCCGaCGUCGCCg -3'
miRNA:   3'- aCUGUGaaa---------CGCGG-------------CGGGC-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 9787 0.68 0.452599
Target:  5'- cGuCGCaacgGCGCgCGCCaaCGUCGCCg -3'
miRNA:   3'- aCuGUGaaa-CGCG-GCGGgcGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 9903 0.69 0.405863
Target:  5'- -aGCGCgccgaaGCGUCGCUCGCGcUCGCg -3'
miRNA:   3'- acUGUGaaa---CGCGGCGGGCGC-AGCGg -5'
24826 5' -58.4 NC_005284.1 + 10920 0.73 0.205209
Target:  5'- gGGCGCgaaugaUGCGCagGCCCGCauggccggccucGUCGCCg -3'
miRNA:   3'- aCUGUGaa----ACGCGg-CGGGCG------------CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 11161 0.69 0.370732
Target:  5'- cUGACGCagcucGCGCCGCggccgCCGCG-CGCg -3'
miRNA:   3'- -ACUGUGaaa--CGCGGCG-----GGCGCaGCGg -5'
24826 5' -58.4 NC_005284.1 + 11416 0.68 0.452599
Target:  5'- uUGACGCgcUGCGUCGaUCGCGaaaacCGCCu -3'
miRNA:   3'- -ACUGUGaaACGCGGCgGGCGCa----GCGG- -5'
24826 5' -58.4 NC_005284.1 + 11753 0.66 0.575026
Target:  5'- cGGCACgcUGgGuUCGCCCGaguacaUCGCCg -3'
miRNA:   3'- aCUGUGaaACgC-GGCGGGCgc----AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.