miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24827 5' -54.5 NC_005284.1 + 26935 0.66 0.794872
Target:  5'- uGCGCCGGGcGggCGuCGUCU---GGCg -3'
miRNA:   3'- cUGCGGCUC-CaaGCuGCAGAacuCCG- -5'
24827 5' -54.5 NC_005284.1 + 6664 0.66 0.775149
Target:  5'- cGCGCCG-GGUUUGGCGaCggccGGCg -3'
miRNA:   3'- cUGCGGCuCCAAGCUGCaGaacuCCG- -5'
24827 5' -54.5 NC_005284.1 + 31260 0.66 0.765061
Target:  5'- --aGUCGAGGUUUGGCGUgUc--GGCg -3'
miRNA:   3'- cugCGGCUCCAAGCUGCAgAacuCCG- -5'
24827 5' -54.5 NC_005284.1 + 50309 0.67 0.702075
Target:  5'- -uCGCCGAgGGUUCGAaGUaUUUGGcGGCg -3'
miRNA:   3'- cuGCGGCU-CCAAGCUgCA-GAACU-CCG- -5'
24827 5' -54.5 NC_005284.1 + 49584 0.68 0.658574
Target:  5'- aGACGUCGGgcugaucagcGGUcuUCGGCGUCaaGuGGCg -3'
miRNA:   3'- -CUGCGGCU----------CCA--AGCUGCAGaaCuCCG- -5'
24827 5' -54.5 NC_005284.1 + 26025 0.68 0.647611
Target:  5'- uAUGCCGGGGcUCGAUGUC----GGCg -3'
miRNA:   3'- cUGCGGCUCCaAGCUGCAGaacuCCG- -5'
24827 5' -54.5 NC_005284.1 + 47514 0.68 0.636634
Target:  5'- -uCGCCGucGuGUUCGGCGUC--GAGGUg -3'
miRNA:   3'- cuGCGGCu-C-CAAGCUGCAGaaCUCCG- -5'
24827 5' -54.5 NC_005284.1 + 10226 0.69 0.614678
Target:  5'- uGGCGaCCGuGGgcacggUGGCG-CUUGGGGCu -3'
miRNA:   3'- -CUGC-GGCuCCaa----GCUGCaGAACUCCG- -5'
24827 5' -54.5 NC_005284.1 + 20595 0.69 0.581879
Target:  5'- aGCGCCGuacGGGUgagCGGCGgcaacguaUCUUGGGGg -3'
miRNA:   3'- cUGCGGC---UCCAa--GCUGC--------AGAACUCCg -5'
24827 5' -54.5 NC_005284.1 + 32893 0.7 0.564524
Target:  5'- cGACGCCGAaaacGcGUuccgcaaccgcugcgUCGACGUCUgauAGGCg -3'
miRNA:   3'- -CUGCGGCU----C-CA---------------AGCUGCAGAac-UCCG- -5'
24827 5' -54.5 NC_005284.1 + 44224 1.13 0.000738
Target:  5'- cGACGCCGAGGUUCGACGUCUUGAGGCg -3'
miRNA:   3'- -CUGCGGCUCCAAGCUGCAGAACUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.