miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24828 3' -57.8 NC_005284.1 + 39438 0.67 0.518722
Target:  5'- cGAGCcaucgGCCUGcACGCCGa--GCGACAc -3'
miRNA:   3'- -CUCGaa---CGGGC-UGCGGCgcuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 9336 0.67 0.512508
Target:  5'- cGAGCaacuggucGCCCGAcaaucgcgaCGCCGCGAauaucgucgccggccGCGACu -3'
miRNA:   3'- -CUCGaa------CGGGCU---------GCGGCGCU---------------UGCUGu -5'
24828 3' -57.8 NC_005284.1 + 7090 0.67 0.508383
Target:  5'- cGAGCgcgcgUGCCCuuccuUGCCGUcAGCGGCAu -3'
miRNA:   3'- -CUCGa----ACGGGcu---GCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 31413 0.67 0.508383
Target:  5'- uGGGCUUGCgCCa--GuUCGCGGGCGACGu -3'
miRNA:   3'- -CUCGAACG-GGcugC-GGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 23345 0.67 0.498132
Target:  5'- uGGGg--GCCCGgcGCGCCGC-AGCGGCGc -3'
miRNA:   3'- -CUCgaaCGGGC--UGCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 5875 0.67 0.498132
Target:  5'- cAGCUU-CUCGAgGCgGCGcAGCGACAc -3'
miRNA:   3'- cUCGAAcGGGCUgCGgCGC-UUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 9611 0.67 0.488986
Target:  5'- cGAGCgucuucacgaucuccUGCCCGACGUCGCcguGCGuCGa -3'
miRNA:   3'- -CUCGa--------------ACGGGCUGCGGCGcu-UGCuGU- -5'
24828 3' -57.8 NC_005284.1 + 46499 0.67 0.487975
Target:  5'- -uGCaUGgCCGACGCCGCacgGGACGGa- -3'
miRNA:   3'- cuCGaACgGGCUGCGGCG---CUUGCUgu -5'
24828 3' -57.8 NC_005284.1 + 39231 0.67 0.487975
Target:  5'- -uGCUgcGCUCGAuCGUCGUGAGCGugGu -3'
miRNA:   3'- cuCGAa-CGGGCU-GCGGCGCUUGCugU- -5'
24828 3' -57.8 NC_005284.1 + 9843 0.67 0.484946
Target:  5'- cGGGCacGCCCuACGCgGCGAucaucgcucgcgagACGGCAg -3'
miRNA:   3'- -CUCGaaCGGGcUGCGgCGCU--------------UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 45894 0.67 0.477915
Target:  5'- cGAGCgguUG-CCGugGUCGCGcGCGAUg -3'
miRNA:   3'- -CUCGa--ACgGGCugCGGCGCuUGCUGu -5'
24828 3' -57.8 NC_005284.1 + 5400 0.68 0.46796
Target:  5'- -uGCUUGCCCGugcggcGCGCCagcucGCGcuCGGCGa -3'
miRNA:   3'- cuCGAACGGGC------UGCGG-----CGCuuGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 8677 0.68 0.46796
Target:  5'- -cGUUUGCCuCGaACGCCGCaAGCGuGCAg -3'
miRNA:   3'- cuCGAACGG-GC-UGCGGCGcUUGC-UGU- -5'
24828 3' -57.8 NC_005284.1 + 47676 0.68 0.46796
Target:  5'- aGGCgUUGaUCGAUGCCGCuGACGGCAa -3'
miRNA:   3'- cUCG-AACgGGCUGCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 19241 0.68 0.458112
Target:  5'- aGGCUcuucgGCUCGACcUCGCGAccGCGACAc -3'
miRNA:   3'- cUCGAa----CGGGCUGcGGCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 20819 0.68 0.438755
Target:  5'- cGAGCa-GCCCGcagcaGCGCCggccgacgaGCGGGCGGCGc -3'
miRNA:   3'- -CUCGaaCGGGC-----UGCGG---------CGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 51395 0.68 0.429254
Target:  5'- cAGCggGCUCGACGCgGCGGAagugcgGGCAc -3'
miRNA:   3'- cUCGaaCGGGCUGCGgCGCUUg-----CUGU- -5'
24828 3' -57.8 NC_005284.1 + 45026 0.68 0.429254
Target:  5'- uGAGCUUGCgCCGuCGCCucgaccgcccGCGcuuCGGCAa -3'
miRNA:   3'- -CUCGAACG-GGCuGCGG----------CGCuu-GCUGU- -5'
24828 3' -57.8 NC_005284.1 + 43607 0.69 0.419875
Target:  5'- aGGCUUGCuuuCCGcGCGCgGCGGccGCGGCGc -3'
miRNA:   3'- cUCGAACG---GGC-UGCGgCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 6998 0.69 0.401495
Target:  5'- -cGCUcGCCCGuCGCCuccGCGAGCGcCGc -3'
miRNA:   3'- cuCGAaCGGGCuGCGG---CGCUUGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.