miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24828 5' -51.8 NC_005284.1 + 13332 0.66 0.902385
Target:  5'- -gCGGUcgaAUgaUGUGGGACGAGgUUGUCGg -3'
miRNA:   3'- gaGCCG---UA--ACGCCUUGCUUgAGCAGU- -5'
24828 5' -51.8 NC_005284.1 + 9703 0.66 0.895302
Target:  5'- gUCGGCAUUGaCGGcu--GGCUCGaUCAa -3'
miRNA:   3'- gAGCCGUAAC-GCCuugcUUGAGC-AGU- -5'
24828 5' -51.8 NC_005284.1 + 24409 0.66 0.895302
Target:  5'- aUCGGCg--GUGGGAaGAGCgUCGUCc -3'
miRNA:   3'- gAGCCGuaaCGCCUUgCUUG-AGCAGu -5'
24828 5' -51.8 NC_005284.1 + 33205 0.66 0.893852
Target:  5'- uUCGGCAUgccgcUGCGcgucGAACGcccgcgcggccuGCUCGUCGg -3'
miRNA:   3'- gAGCCGUA-----ACGC----CUUGCu-----------UGAGCAGU- -5'
24828 5' -51.8 NC_005284.1 + 30865 0.66 0.864253
Target:  5'- -aCGGCAcaucUGCGGcAGCGcACUgGUCGc -3'
miRNA:   3'- gaGCCGUa---ACGCC-UUGCuUGAgCAGU- -5'
24828 5' -51.8 NC_005284.1 + 42524 0.68 0.810306
Target:  5'- -gCGGC---GCGGAccACGAACUCGcCGu -3'
miRNA:   3'- gaGCCGuaaCGCCU--UGCUUGAGCaGU- -5'
24828 5' -51.8 NC_005284.1 + 14567 0.68 0.789651
Target:  5'- uUCGGCgcugugcGUUGCGcuuGGCGAuCUCGUCGg -3'
miRNA:   3'- gAGCCG-------UAACGCc--UUGCUuGAGCAGU- -5'
24828 5' -51.8 NC_005284.1 + 32582 0.68 0.780562
Target:  5'- uUCGGaaagcGCGGGAUGAugUgGUCAg -3'
miRNA:   3'- gAGCCguaa-CGCCUUGCUugAgCAGU- -5'
24828 5' -51.8 NC_005284.1 + 32799 0.69 0.75991
Target:  5'- gUCGGCcugcgcggGUUGCGGGGCGg---CGUCGg -3'
miRNA:   3'- gAGCCG--------UAACGCCUUGCuugaGCAGU- -5'
24828 5' -51.8 NC_005284.1 + 4637 0.69 0.727939
Target:  5'- gUCGGCAgcgGCGuGAGCGGcagcaacucGCUgGUCGu -3'
miRNA:   3'- gAGCCGUaa-CGC-CUUGCU---------UGAgCAGU- -5'
24828 5' -51.8 NC_005284.1 + 26927 0.72 0.560885
Target:  5'- uUCGGCGaUGCGccGGGCGGGCgUCGUCu -3'
miRNA:   3'- gAGCCGUaACGC--CUUGCUUG-AGCAGu -5'
24828 5' -51.8 NC_005284.1 + 12788 0.73 0.506559
Target:  5'- aUCGGCA-UGCGGGcGCGGAgUCGUUc -3'
miRNA:   3'- gAGCCGUaACGCCU-UGCUUgAGCAGu -5'
24828 5' -51.8 NC_005284.1 + 43624 0.75 0.405671
Target:  5'- -gCGGCGgccGCGGcGCGAGCUgCGUCAg -3'
miRNA:   3'- gaGCCGUaa-CGCCuUGCUUGA-GCAGU- -5'
24828 5' -51.8 NC_005284.1 + 40999 0.77 0.302711
Target:  5'- -cCGGCAUUGCuGGAACGGcgaUCGUCGc -3'
miRNA:   3'- gaGCCGUAACG-CCUUGCUug-AGCAGU- -5'
24828 5' -51.8 NC_005284.1 + 42837 1.1 0.002186
Target:  5'- cCUCGGCAUUGCGGAACGAACUCGUCAg -3'
miRNA:   3'- -GAGCCGUAACGCCUUGCUUGAGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.