miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24829 3' -54.5 NC_005284.1 + 21820 0.66 0.765097
Target:  5'- cGACGGCGUgccCGGcGcuuccaGCGCCGCCGGcgUg -3'
miRNA:   3'- -CUGCCGUA---GUCuC------UGUGGCGGCUuaG- -5'
24829 3' -54.5 NC_005284.1 + 4749 0.66 0.765097
Target:  5'- aGACGucgucgaguaGCAUC-GAGuACACCGUCGAAa- -3'
miRNA:   3'- -CUGC----------CGUAGuCUC-UGUGGCGGCUUag -5'
24829 3' -54.5 NC_005284.1 + 18526 0.66 0.762004
Target:  5'- uACGGCGUCGauacgcaacugaccGGGAaaaccacucCGCCGCCGucgGUCg -3'
miRNA:   3'- cUGCCGUAGU--------------CUCU---------GUGGCGGCu--UAG- -5'
24829 3' -54.5 NC_005284.1 + 5338 0.66 0.75474
Target:  5'- -cCGGCGUgaAGAGugGCCgGUCGAGgUCg -3'
miRNA:   3'- cuGCCGUAg-UCUCugUGG-CGGCUU-AG- -5'
24829 3' -54.5 NC_005284.1 + 18021 0.66 0.744256
Target:  5'- cGACGGCGacaCGGucACGCuCGCCGAGc- -3'
miRNA:   3'- -CUGCCGUa--GUCucUGUG-GCGGCUUag -5'
24829 3' -54.5 NC_005284.1 + 33114 0.66 0.744256
Target:  5'- cGACGGC-----GGcCACCGCCGAcgCg -3'
miRNA:   3'- -CUGCCGuagucUCuGUGGCGGCUuaG- -5'
24829 3' -54.5 NC_005284.1 + 21673 0.66 0.722951
Target:  5'- cGCcGCGUCGGcGGugGCCGCCG--UCg -3'
miRNA:   3'- cUGcCGUAGUC-UCugUGGCGGCuuAG- -5'
24829 3' -54.5 NC_005284.1 + 5942 0.67 0.679328
Target:  5'- aGGCGGCAguugCGGAcgccacggcuGGCGCCGauCCGAucGUCg -3'
miRNA:   3'- -CUGCCGUa---GUCU----------CUGUGGC--GGCU--UAG- -5'
24829 3' -54.5 NC_005284.1 + 11932 0.67 0.679328
Target:  5'- aGAUGGCcgaGGAGGCGCUGaCGAGUUc -3'
miRNA:   3'- -CUGCCGuagUCUCUGUGGCgGCUUAG- -5'
24829 3' -54.5 NC_005284.1 + 44286 0.67 0.668279
Target:  5'- uGAuCGGCAUCcGAGAcCACCGaCGGcgCa -3'
miRNA:   3'- -CU-GCCGUAGuCUCU-GUGGCgGCUuaG- -5'
24829 3' -54.5 NC_005284.1 + 49521 0.67 0.657196
Target:  5'- cGACGGCAUCAGGuucGACAgCaaGCgCGAgcgGUCg -3'
miRNA:   3'- -CUGCCGUAGUCU---CUGUgG--CG-GCU---UAG- -5'
24829 3' -54.5 NC_005284.1 + 38745 0.68 0.61273
Target:  5'- gGACGGCAUgAGcucGAUugCGUCGAggCa -3'
miRNA:   3'- -CUGCCGUAgUCu--CUGugGCGGCUuaG- -5'
24829 3' -54.5 NC_005284.1 + 5885 0.68 0.601632
Target:  5'- aGGCGGCG-CAGcGACaccuucGCCGCCGGGc- -3'
miRNA:   3'- -CUGCCGUaGUCuCUG------UGGCGGCUUag -5'
24829 3' -54.5 NC_005284.1 + 12115 0.68 0.59056
Target:  5'- cGGCGGUGUCucuGAUGCCGUCGGcgCg -3'
miRNA:   3'- -CUGCCGUAGucuCUGUGGCGGCUuaG- -5'
24829 3' -54.5 NC_005284.1 + 46116 0.69 0.579525
Target:  5'- uGCGGCGUUcGAGGCAaaCGCCGcAUCc -3'
miRNA:   3'- cUGCCGUAGuCUCUGUg-GCGGCuUAG- -5'
24829 3' -54.5 NC_005284.1 + 18843 0.69 0.579525
Target:  5'- --gGGCGUgCAGGGGCAgCCGagcaCGGAUCa -3'
miRNA:   3'- cugCCGUA-GUCUCUGU-GGCg---GCUUAG- -5'
24829 3' -54.5 NC_005284.1 + 46585 0.69 0.557595
Target:  5'- uGGCGGCG-CAGuGGGCAaCGCCGAacGUCc -3'
miRNA:   3'- -CUGCCGUaGUC-UCUGUgGCGGCU--UAG- -5'
24829 3' -54.5 NC_005284.1 + 43159 0.7 0.525174
Target:  5'- uGCGGUGaCAuuGAcGACGCCGUCGAGUCu -3'
miRNA:   3'- cUGCCGUaGU--CU-CUGUGGCGGCUUAG- -5'
24829 3' -54.5 NC_005284.1 + 19328 0.7 0.525174
Target:  5'- cGugGGCAU-GGAcaacgacaacGGCAUCGUCGAAUCg -3'
miRNA:   3'- -CugCCGUAgUCU----------CUGUGGCGGCUUAG- -5'
24829 3' -54.5 NC_005284.1 + 11750 0.7 0.525174
Target:  5'- gGACGGCAcgcuggguUCGcccGAGuACAUCGCCGAGaUCg -3'
miRNA:   3'- -CUGCCGU--------AGU---CUC-UGUGGCGGCUU-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.