Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 42512 | 1.1 | 0.000339 |
Target: 5'- uGCGACACCACUGCGGCGCGGACCACGa -3' miRNA: 3'- -CGCUGUGGUGACGCCGCGCCUGGUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 31433 | 0.81 | 0.046478 |
Target: 5'- gGCGACgugcGCCGCUGCGGCGCGccgggcccccaauuGACCGCc -3' miRNA: 3'- -CGCUG----UGGUGACGCCGCGC--------------CUGGUGc -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 21526 | 0.77 | 0.101637 |
Target: 5'- cGCGGCAgcaucgcCCACUGCGGagGCGGugCGCc -3' miRNA: 3'- -CGCUGU-------GGUGACGCCg-CGCCugGUGc -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 47992 | 0.75 | 0.140878 |
Target: 5'- uCGACGCCAUUGCGGaauuCGCGGGCgugaCGCGc -3' miRNA: 3'- cGCUGUGGUGACGCC----GCGCCUG----GUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 20139 | 0.74 | 0.169515 |
Target: 5'- aCGuCAUCACUGCGGCaGacguggaGGGCCGCGa -3' miRNA: 3'- cGCuGUGGUGACGCCG-Cg------CCUGGUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 36688 | 0.72 | 0.20325 |
Target: 5'- cGCGAUACUGCUGCGcCGCGaGCuCGCGg -3' miRNA: 3'- -CGCUGUGGUGACGCcGCGCcUG-GUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 9236 | 0.72 | 0.218858 |
Target: 5'- gGCGACgcGCCACgcgGCGGCauagagcGCGGAgCAUGc -3' miRNA: 3'- -CGCUG--UGGUGa--CGCCG-------CGCCUgGUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 39480 | 0.72 | 0.20325 |
Target: 5'- cGCGAUGCCGCUGCGcccgcacaucGUGCGGuCCuCGu -3' miRNA: 3'- -CGCUGUGGUGACGC----------CGCGCCuGGuGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 54580 | 0.72 | 0.219414 |
Target: 5'- cGUGACugucGCCACUGCGGUu--GACCACGu -3' miRNA: 3'- -CGCUG----UGGUGACGCCGcgcCUGGUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 46033 | 0.72 | 0.227326 |
Target: 5'- cCGaACGCCGCUGCGGCggcuugugcguauucGCGGAUCGa- -3' miRNA: 3'- cGC-UGUGGUGACGCCG---------------CGCCUGGUgc -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 38903 | 0.72 | 0.225041 |
Target: 5'- cGCGcGCACCGCcucUGCGGCGaCGaGACgGCa -3' miRNA: 3'- -CGC-UGUGGUG---ACGCCGC-GC-CUGgUGc -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 43218 | 0.71 | 0.255033 |
Target: 5'- aCGAuCGCCGCgaaagGCGGCuaucaGGGCCGCGa -3' miRNA: 3'- cGCU-GUGGUGa----CGCCGcg---CCUGGUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 44762 | 0.71 | 0.248782 |
Target: 5'- cGCGACAUCACgcuCGGCuuGCGcaaGGCCGCGg -3' miRNA: 3'- -CGCUGUGGUGac-GCCG--CGC---CUGGUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 5927 | 0.71 | 0.255033 |
Target: 5'- aCGACGCCGagaugcagGCGGCaguuGCGGacGCCACGg -3' miRNA: 3'- cGCUGUGGUga------CGCCG----CGCC--UGGUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 44703 | 0.71 | 0.248782 |
Target: 5'- -aGAC-CCGCcGCGGuCGCGGucGCCGCGc -3' miRNA: 3'- cgCUGuGGUGaCGCC-GCGCC--UGGUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 23354 | 0.7 | 0.309724 |
Target: 5'- gGCG-CGCCGCaGCGGCGCacgucGcCCGCGa -3' miRNA: 3'- -CGCuGUGGUGaCGCCGCGc----CuGGUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 44862 | 0.7 | 0.309724 |
Target: 5'- aGCGccguACGCCGCUGCuGCGC-GAgCGCGa -3' miRNA: 3'- -CGC----UGUGGUGACGcCGCGcCUgGUGC- -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 32428 | 0.7 | 0.274557 |
Target: 5'- uCGACuCCAUUGagaagGGCGCGGAgCACa -3' miRNA: 3'- cGCUGuGGUGACg----CCGCGCCUgGUGc -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 14850 | 0.69 | 0.332422 |
Target: 5'- uGCGGCuauACCGgUGCGGCGUguuucgacaaGGACgACa -3' miRNA: 3'- -CGCUG---UGGUgACGCCGCG----------CCUGgUGc -5' |
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24830 | 3' | -59.8 | NC_005284.1 | + | 9359 | 0.69 | 0.356318 |
Target: 5'- cGCGACGCCGCgaauauCGuCGCcGGCCGCGa -3' miRNA: 3'- -CGCUGUGGUGac----GCcGCGcCUGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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