miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24830 3' -59.8 NC_005284.1 + 15889 0.69 0.327786
Target:  5'- cGCGccCGCC-CUGCGGgcaaucacaacccacCGgGGACCGCGa -3'
miRNA:   3'- -CGCu-GUGGuGACGCC---------------GCgCCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 23160 0.69 0.34822
Target:  5'- aGgGGCACCGaucgucGCGGCGCGuuCCGCu -3'
miRNA:   3'- -CgCUGUGGUga----CGCCGCGCcuGGUGc -5'
24830 3' -59.8 NC_005284.1 + 17696 0.69 0.317157
Target:  5'- cGCGACGCC-CUGaaucucgcCGGCGCGucGAUgGCGg -3'
miRNA:   3'- -CGCUGUGGuGAC--------GCCGCGC--CUGgUGC- -5'
24830 3' -59.8 NC_005284.1 + 14850 0.69 0.332422
Target:  5'- uGCGGCuauACCGgUGCGGCGUguuucgacaaGGACgACa -3'
miRNA:   3'- -CGCUG---UGGUgACGCCGCG----------CCUGgUGc -5'
24830 3' -59.8 NC_005284.1 + 20519 0.69 0.316407
Target:  5'- cGCGACGCUgaaacugGCUGCGcGCGCaGuuacGCCGCa -3'
miRNA:   3'- -CGCUGUGG-------UGACGC-CGCGcC----UGGUGc -5'
24830 3' -59.8 NC_005284.1 + 23849 0.69 0.34822
Target:  5'- uGgGugAUCGCcgGCGGCGaaaGcGGCCACGg -3'
miRNA:   3'- -CgCugUGGUGa-CGCCGCg--C-CUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 39303 0.68 0.398756
Target:  5'- cGCGACGCCGCgcucgGCGagauaccagucGCGCacGAUCGCGu -3'
miRNA:   3'- -CGCUGUGGUGa----CGC-----------CGCGc-CUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 22055 0.68 0.398756
Target:  5'- cGCGGCAagcaaCAagggcuaUGCGGC-CGGACUGCGc -3'
miRNA:   3'- -CGCUGUg----GUg------ACGCCGcGCCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 43619 0.68 0.390013
Target:  5'- cGCG-CGCgGCggccGCGGCGCGaGCUGCGu -3'
miRNA:   3'- -CGCuGUGgUGa---CGCCGCGCcUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 19462 0.68 0.407624
Target:  5'- uGCGGCAggCGCUGauCGGUGCGGGCuggauCACGa -3'
miRNA:   3'- -CGCUGUg-GUGAC--GCCGCGCCUG-----GUGC- -5'
24830 3' -59.8 NC_005284.1 + 10724 0.68 0.363718
Target:  5'- cGCaGGCACUcgccgcaauggauGCUGCGGCaagGgGGGCCGCc -3'
miRNA:   3'- -CG-CUGUGG-------------UGACGCCG---CgCCUGGUGc -5'
24830 3' -59.8 NC_005284.1 + 10645 0.68 0.364547
Target:  5'- gGCGGCGaagCGCUGCgcgaggaacuGGUGCGcGCCGCGg -3'
miRNA:   3'- -CGCUGUg--GUGACG----------CCGCGCcUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 46715 0.68 0.364547
Target:  5'- gGCGACGCCAaugaGCaGCGaaaacagcaauCGGACUACGa -3'
miRNA:   3'- -CGCUGUGGUga--CGcCGC-----------GCCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 26297 0.68 0.381396
Target:  5'- uCGAUAaggCACUGCGGCGCGuGCgaGCGg -3'
miRNA:   3'- cGCUGUg--GUGACGCCGCGCcUGg-UGC- -5'
24830 3' -59.8 NC_005284.1 + 48181 0.68 0.406732
Target:  5'- aGUGACGCCcguUGCGGUgacagcucgcgcaGCGG-CCACGc -3'
miRNA:   3'- -CGCUGUGGug-ACGCCG-------------CGCCuGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 5894 0.68 0.390013
Target:  5'- aGCGACACCuucGCcGCcgGGCGUGu-CCACGg -3'
miRNA:   3'- -CGCUGUGG---UGaCG--CCGCGCcuGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 8280 0.67 0.444296
Target:  5'- --cGCACCAUccgucccgUGCGGCGUcGGCCAUGc -3'
miRNA:   3'- cgcUGUGGUG--------ACGCCGCGcCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 24626 0.67 0.444296
Target:  5'- aCGuCACCugUGCGGCGaacuGACCGu- -3'
miRNA:   3'- cGCuGUGGugACGCCGCgc--CUGGUgc -5'
24830 3' -59.8 NC_005284.1 + 15592 0.67 0.444296
Target:  5'- cGCGGaAUCG-UGCaGCGUGGACUACGg -3'
miRNA:   3'- -CGCUgUGGUgACGcCGCGCCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 35540 0.67 0.452799
Target:  5'- aCGACGCCGCgacGCguccguucagaucGGCGUaGGACUGCGc -3'
miRNA:   3'- cGCUGUGGUGa--CG-------------CCGCG-CCUGGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.