miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24830 3' -59.8 NC_005284.1 + 43218 0.71 0.255033
Target:  5'- aCGAuCGCCGCgaaagGCGGCuaucaGGGCCGCGa -3'
miRNA:   3'- cGCU-GUGGUGa----CGCCGcg---CCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 43619 0.68 0.390013
Target:  5'- cGCG-CGCgGCggccGCGGCGCGaGCUGCGu -3'
miRNA:   3'- -CGCuGUGgUGa---CGCCGCGCcUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 44703 0.71 0.248782
Target:  5'- -aGAC-CCGCcGCGGuCGCGGucGCCGCGc -3'
miRNA:   3'- cgCUGuGGUGaCGCC-GCGCC--UGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 44762 0.71 0.248782
Target:  5'- cGCGACAUCACgcuCGGCuuGCGcaaGGCCGCGg -3'
miRNA:   3'- -CGCUGUGGUGac-GCCG--CGC---CUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 44862 0.7 0.309724
Target:  5'- aGCGccguACGCCGCUGCuGCGC-GAgCGCGa -3'
miRNA:   3'- -CGC----UGUGGUGACGcCGCGcCUgGUGC- -5'
24830 3' -59.8 NC_005284.1 + 45191 0.67 0.416615
Target:  5'- aGCuuCGCCGCcGCGGCaGCGcGAUCGCc -3'
miRNA:   3'- -CGcuGUGGUGaCGCCG-CGC-CUGGUGc -5'
24830 3' -59.8 NC_005284.1 + 46033 0.72 0.227326
Target:  5'- cCGaACGCCGCUGCGGCggcuugugcguauucGCGGAUCGa- -3'
miRNA:   3'- cGC-UGUGGUGACGCCG---------------CGCCUGGUgc -5'
24830 3' -59.8 NC_005284.1 + 46715 0.68 0.364547
Target:  5'- gGCGACGCCAaugaGCaGCGaaaacagcaauCGGACUACGa -3'
miRNA:   3'- -CGCUGUGGUga--CGcCGC-----------GCCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 47685 0.67 0.45375
Target:  5'- uCGAUGCCGCUGaCGGCaaGGAagggCACGc -3'
miRNA:   3'- cGCUGUGGUGAC-GCCGcgCCUg---GUGC- -5'
24830 3' -59.8 NC_005284.1 + 47742 0.67 0.416615
Target:  5'- uCGGCGgUACgGCGGCGCGcGuacguCCGCGu -3'
miRNA:   3'- cGCUGUgGUGaCGCCGCGC-Cu----GGUGC- -5'
24830 3' -59.8 NC_005284.1 + 47992 0.75 0.140878
Target:  5'- uCGACGCCAUUGCGGaauuCGCGGGCgugaCGCGc -3'
miRNA:   3'- cGCUGUGGUGACGCC----GCGCCUG----GUGC- -5'
24830 3' -59.8 NC_005284.1 + 48181 0.68 0.406732
Target:  5'- aGUGACGCCcguUGCGGUgacagcucgcgcaGCGG-CCACGc -3'
miRNA:   3'- -CGCUGUGGug-ACGCCG-------------CGCCuGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 50116 0.67 0.425725
Target:  5'- cGCGGCgAUCGCgcacGCGGCGUucGCCAUGg -3'
miRNA:   3'- -CGCUG-UGGUGa---CGCCGCGccUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 54580 0.72 0.219414
Target:  5'- cGUGACugucGCCACUGCGGUu--GACCACGu -3'
miRNA:   3'- -CGCUG----UGGUGACGCCGcgcCUGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.