Results 41 - 54 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 33151 | 0.67 | 0.45375 |
Target: 5'- gGCGAuCGCaCGCUGCucGGCGUcGAgCGCGg -3' miRNA: 3'- -CGCU-GUG-GUGACG--CCGCGcCUgGUGC- -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 35540 | 0.67 | 0.452799 |
Target: 5'- aCGACGCCGCgacGCguccguucagaucGGCGUaGGACUGCGc -3' miRNA: 3'- cGCUGUGGUGa--CG-------------CCGCG-CCUGGUGC- -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 15592 | 0.67 | 0.444296 |
Target: 5'- cGCGGaAUCG-UGCaGCGUGGACUACGg -3' miRNA: 3'- -CGCUgUGGUgACGcCGCGCCUGGUGC- -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 24626 | 0.67 | 0.444296 |
Target: 5'- aCGuCACCugUGCGGCGaacuGACCGu- -3' miRNA: 3'- cGCuGUGGugACGCCGCgc--CUGGUgc -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 8280 | 0.67 | 0.444296 |
Target: 5'- --cGCACCAUccgucccgUGCGGCGUcGGCCAUGc -3' miRNA: 3'- cgcUGUGGUG--------ACGCCGCGcCUGGUGC- -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 6590 | 0.67 | 0.434953 |
Target: 5'- cGCGugGCCGCUGCGcGaGCuGucACCGCa -3' miRNA: 3'- -CGCugUGGUGACGC-CgCGcC--UGGUGc -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 45191 | 0.67 | 0.416615 |
Target: 5'- aGCuuCGCCGCcGCGGCaGCGcGAUCGCc -3' miRNA: 3'- -CGcuGUGGUGaCGCCG-CGC-CUGGUGc -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 39303 | 0.68 | 0.398756 |
Target: 5'- cGCGACGCCGCgcucgGCGagauaccagucGCGCacGAUCGCGu -3' miRNA: 3'- -CGCUGUGGUGa----CGC-----------CGCGc-CUGGUGC- -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 22055 | 0.68 | 0.398756 |
Target: 5'- cGCGGCAagcaaCAagggcuaUGCGGC-CGGACUGCGc -3' miRNA: 3'- -CGCUGUg----GUg------ACGCCGcGCCUGGUGC- -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 43619 | 0.68 | 0.390013 |
Target: 5'- cGCG-CGCgGCggccGCGGCGCGaGCUGCGu -3' miRNA: 3'- -CGCuGUGgUGa---CGCCGCGCcUGGUGC- -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 5894 | 0.68 | 0.390013 |
Target: 5'- aGCGACACCuucGCcGCcgGGCGUGu-CCACGg -3' miRNA: 3'- -CGCUGUGG---UGaCG--CCGCGCcuGGUGC- -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 9359 | 0.69 | 0.356318 |
Target: 5'- cGCGACGCCGCgaauauCGuCGCcGGCCGCGa -3' miRNA: 3'- -CGCUGUGGUGac----GCcGCGcCUGGUGC- -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 23849 | 0.69 | 0.34822 |
Target: 5'- uGgGugAUCGCcgGCGGCGaaaGcGGCCACGg -3' miRNA: 3'- -CgCugUGGUGa-CGCCGCg--C-CUGGUGC- -5' |
|||||||
24830 | 3' | -59.8 | NC_005284.1 | + | 38493 | 0.66 | 0.49162 |
Target: 5'- aGCGGCACCGgcucgccCUGCGcaGCGCuGuuCACGg -3' miRNA: 3'- -CGCUGUGGU-------GACGC--CGCGcCugGUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home