miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24830 3' -59.8 NC_005284.1 + 39303 0.68 0.398756
Target:  5'- cGCGACGCCGCgcucgGCGagauaccagucGCGCacGAUCGCGu -3'
miRNA:   3'- -CGCUGUGGUGa----CGC-----------CGCGc-CUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 22055 0.68 0.398756
Target:  5'- cGCGGCAagcaaCAagggcuaUGCGGC-CGGACUGCGc -3'
miRNA:   3'- -CGCUGUg----GUg------ACGCCGcGCCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 43619 0.68 0.390013
Target:  5'- cGCG-CGCgGCggccGCGGCGCGaGCUGCGu -3'
miRNA:   3'- -CGCuGUGgUGa---CGCCGCGCcUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 5894 0.68 0.390013
Target:  5'- aGCGACACCuucGCcGCcgGGCGUGu-CCACGg -3'
miRNA:   3'- -CGCUGUGG---UGaCG--CCGCGCcuGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 26297 0.68 0.381396
Target:  5'- uCGAUAaggCACUGCGGCGCGuGCgaGCGg -3'
miRNA:   3'- cGCUGUg--GUGACGCCGCGCcUGg-UGC- -5'
24830 3' -59.8 NC_005284.1 + 46715 0.68 0.364547
Target:  5'- gGCGACGCCAaugaGCaGCGaaaacagcaauCGGACUACGa -3'
miRNA:   3'- -CGCUGUGGUga--CGcCGC-----------GCCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 10645 0.68 0.364547
Target:  5'- gGCGGCGaagCGCUGCgcgaggaacuGGUGCGcGCCGCGg -3'
miRNA:   3'- -CGCUGUg--GUGACG----------CCGCGCcUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 10724 0.68 0.363718
Target:  5'- cGCaGGCACUcgccgcaauggauGCUGCGGCaagGgGGGCCGCc -3'
miRNA:   3'- -CG-CUGUGG-------------UGACGCCG---CgCCUGGUGc -5'
24830 3' -59.8 NC_005284.1 + 9359 0.69 0.356318
Target:  5'- cGCGACGCCGCgaauauCGuCGCcGGCCGCGa -3'
miRNA:   3'- -CGCUGUGGUGac----GCcGCGcCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 23849 0.69 0.34822
Target:  5'- uGgGugAUCGCcgGCGGCGaaaGcGGCCACGg -3'
miRNA:   3'- -CgCugUGGUGa-CGCCGCg--C-CUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 23160 0.69 0.34822
Target:  5'- aGgGGCACCGaucgucGCGGCGCGuuCCGCu -3'
miRNA:   3'- -CgCUGUGGUga----CGCCGCGCcuGGUGc -5'
24830 3' -59.8 NC_005284.1 + 14850 0.69 0.332422
Target:  5'- uGCGGCuauACCGgUGCGGCGUguuucgacaaGGACgACa -3'
miRNA:   3'- -CGCUG---UGGUgACGCCGCG----------CCUGgUGc -5'
24830 3' -59.8 NC_005284.1 + 32941 0.69 0.332422
Target:  5'- gGCGGCACCAUcgcccacgccgGCGGCGCuGGAa-GCGc -3'
miRNA:   3'- -CGCUGUGGUGa----------CGCCGCG-CCUggUGC- -5'
24830 3' -59.8 NC_005284.1 + 15889 0.69 0.327786
Target:  5'- cGCGccCGCC-CUGCGGgcaaucacaacccacCGgGGACCGCGa -3'
miRNA:   3'- -CGCu-GUGGuGACGCC---------------GCgCCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 17696 0.69 0.317157
Target:  5'- cGCGACGCC-CUGaaucucgcCGGCGCGucGAUgGCGg -3'
miRNA:   3'- -CGCUGUGGuGAC--------GCCGCGC--CUGgUGC- -5'
24830 3' -59.8 NC_005284.1 + 20519 0.69 0.316407
Target:  5'- cGCGACGCUgaaacugGCUGCGcGCGCaGuuacGCCGCa -3'
miRNA:   3'- -CGCUGUGG-------UGACGC-CGCGcC----UGGUGc -5'
24830 3' -59.8 NC_005284.1 + 23354 0.7 0.309724
Target:  5'- gGCG-CGCCGCaGCGGCGCacgucGcCCGCGa -3'
miRNA:   3'- -CGCuGUGGUGaCGCCGCGc----CuGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 44862 0.7 0.309724
Target:  5'- aGCGccguACGCCGCUGCuGCGC-GAgCGCGa -3'
miRNA:   3'- -CGC----UGUGGUGACGcCGCGcCUgGUGC- -5'
24830 3' -59.8 NC_005284.1 + 32428 0.7 0.274557
Target:  5'- uCGACuCCAUUGagaagGGCGCGGAgCACa -3'
miRNA:   3'- cGCUGuGGUGACg----CCGCGCCUgGUGc -5'
24830 3' -59.8 NC_005284.1 + 5927 0.71 0.255033
Target:  5'- aCGACGCCGagaugcagGCGGCaguuGCGGacGCCACGg -3'
miRNA:   3'- cGCUGUGGUga------CGCCG----CGCC--UGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.