miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24831 3' -58.9 NC_005284.1 + 37321 0.66 0.559349
Target:  5'- -gCCCCAguacgaaauGCCGCGAaagacGCUCGCGa -3'
miRNA:   3'- gaGGGGU---------UGGCGCUaguc-CGAGCGCc -5'
24831 3' -58.9 NC_005284.1 + 42744 0.66 0.547886
Target:  5'- uUCUCC-GCCGCGAUCauuacguGGGCgaUUGCGa -3'
miRNA:   3'- gAGGGGuUGGCGCUAG-------UCCG--AGCGCc -5'
24831 3' -58.9 NC_005284.1 + 40992 0.66 0.537529
Target:  5'- cCUCCCCccggcauugcuggAACgGCGAUCG---UCGCGGa -3'
miRNA:   3'- -GAGGGG-------------UUGgCGCUAGUccgAGCGCC- -5'
24831 3' -58.9 NC_005284.1 + 13164 0.66 0.528266
Target:  5'- gCUCUCCGA-UGCGuGUCGGaGCUCGCa- -3'
miRNA:   3'- -GAGGGGUUgGCGC-UAGUC-CGAGCGcc -5'
24831 3' -58.9 NC_005284.1 + 31739 0.66 0.528266
Target:  5'- gCUCCCgCAGCCaGCGAU-AGcGCUCuGCGc -3'
miRNA:   3'- -GAGGG-GUUGG-CGCUAgUC-CGAG-CGCc -5'
24831 3' -58.9 NC_005284.1 + 15081 0.67 0.497845
Target:  5'- cCUCCUCgAACUGCGccGUCuGcCUCGCGGc -3'
miRNA:   3'- -GAGGGG-UUGGCGC--UAGuCcGAGCGCC- -5'
24831 3' -58.9 NC_005284.1 + 18712 0.67 0.496844
Target:  5'- uUCUCCGACuuCGCGuauccgcaggcGUCgacgucguaucagGGGCUCGCGGu -3'
miRNA:   3'- gAGGGGUUG--GCGC-----------UAG-------------UCCGAGCGCC- -5'
24831 3' -58.9 NC_005284.1 + 45055 0.67 0.478006
Target:  5'- uUCUCgAAgCGUGggCGGGCgagCGCGGc -3'
miRNA:   3'- gAGGGgUUgGCGCuaGUCCGa--GCGCC- -5'
24831 3' -58.9 NC_005284.1 + 9850 0.68 0.430217
Target:  5'- -gCCCUAcGCgGCGAUCAucGCUCGCGa -3'
miRNA:   3'- gaGGGGU-UGgCGCUAGUc-CGAGCGCc -5'
24831 3' -58.9 NC_005284.1 + 17031 0.69 0.385351
Target:  5'- uUCCCCGcuuGCCGCGcgCGGGauuucCUCuCGGa -3'
miRNA:   3'- gAGGGGU---UGGCGCuaGUCC-----GAGcGCC- -5'
24831 3' -58.9 NC_005284.1 + 24039 0.69 0.359958
Target:  5'- --aCCCGGCCGCugGAUCAaucuGGCagGCGGa -3'
miRNA:   3'- gagGGGUUGGCG--CUAGU----CCGagCGCC- -5'
24831 3' -58.9 NC_005284.1 + 32739 0.69 0.357484
Target:  5'- -gCCCUuguugcuuGCCGCGAUCAGuucaggaucgucgcGCUCGCGc -3'
miRNA:   3'- gaGGGGu-------UGGCGCUAGUC--------------CGAGCGCc -5'
24831 3' -58.9 NC_005284.1 + 31898 0.7 0.305371
Target:  5'- -gUCCCAACUGaaaauGAUCA-GCUCGCGGc -3'
miRNA:   3'- gaGGGGUUGGCg----CUAGUcCGAGCGCC- -5'
24831 3' -58.9 NC_005284.1 + 23976 0.71 0.298111
Target:  5'- uCUCgCCUacGACCGCGAUCGGGacgaUC-CGGa -3'
miRNA:   3'- -GAG-GGG--UUGGCGCUAGUCCg---AGcGCC- -5'
24831 3' -58.9 NC_005284.1 + 46338 0.71 0.270414
Target:  5'- cCUCUCCcuCCGCcGUCgcGGGCUCGcCGGa -3'
miRNA:   3'- -GAGGGGuuGGCGcUAG--UCCGAGC-GCC- -5'
24831 3' -58.9 NC_005284.1 + 42312 1.11 0.00036
Target:  5'- aCUCCCCAACCGCGAUCAGGCUCGCGGg -3'
miRNA:   3'- -GAGGGGUUGGCGCUAGUCCGAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.