miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24831 5' -57 NC_005284.1 + 30573 0.66 0.610185
Target:  5'- aGUCuCGCaguuu-UCGAGGCUGGCGCGc -3'
miRNA:   3'- -UAG-GCGggagcuAGCUUUGACCGCGC- -5'
24831 5' -57 NC_005284.1 + 18911 0.66 0.610185
Target:  5'- aGUCgGCgCUUGGcaCGGAGCUGcGCGCGc -3'
miRNA:   3'- -UAGgCGgGAGCUa-GCUUUGAC-CGCGC- -5'
24831 5' -57 NC_005284.1 + 16669 0.66 0.599303
Target:  5'- uUCCgGCCgUCGAgcgUGAGGCcGGCGuCGg -3'
miRNA:   3'- uAGG-CGGgAGCUa--GCUUUGaCCGC-GC- -5'
24831 5' -57 NC_005284.1 + 4025 0.66 0.588448
Target:  5'- cAUCCa-CCUCGAcggcugCGAucAACUGGCGCu -3'
miRNA:   3'- -UAGGcgGGAGCUa-----GCU--UUGACCGCGc -5'
24831 5' -57 NC_005284.1 + 18564 0.67 0.57763
Target:  5'- -gCCGCCgUCGGUCGugucgcuGACUgcGGCGgGc -3'
miRNA:   3'- uaGGCGGgAGCUAGCu------UUGA--CCGCgC- -5'
24831 5' -57 NC_005284.1 + 35400 0.67 0.57763
Target:  5'- -aCCGCCCUCG-UCGAucAC-GGCGa- -3'
miRNA:   3'- uaGGCGGGAGCuAGCUu-UGaCCGCgc -5'
24831 5' -57 NC_005284.1 + 47765 0.67 0.556134
Target:  5'- cGUCCGCgUaagcaGAUCGAGGC-GGCGCu -3'
miRNA:   3'- -UAGGCGgGag---CUAGCUUUGaCCGCGc -5'
24831 5' -57 NC_005284.1 + 28866 0.67 0.534875
Target:  5'- gGUCCGgaUCUCGGUCGAAcGCUG-CGCa -3'
miRNA:   3'- -UAGGCg-GGAGCUAGCUU-UGACcGCGc -5'
24831 5' -57 NC_005284.1 + 18308 0.68 0.512871
Target:  5'- uGUCCGCCCUUGAauccccgUCuGAGCUGaCGCc -3'
miRNA:   3'- -UAGGCGGGAGCU-------AGcUUUGACcGCGc -5'
24831 5' -57 NC_005284.1 + 11709 0.68 0.501493
Target:  5'- uUUCGCCgUCGA-CGGGACgaacugacgaagGGCGCGc -3'
miRNA:   3'- uAGGCGGgAGCUaGCUUUGa-----------CCGCGC- -5'
24831 5' -57 NC_005284.1 + 52860 0.68 0.463095
Target:  5'- cUUCGUCCUCGA-----GCUGGUGCGa -3'
miRNA:   3'- uAGGCGGGAGCUagcuuUGACCGCGC- -5'
24831 5' -57 NC_005284.1 + 15363 0.69 0.452268
Target:  5'- -gCCGauggCUCGAUCGGcaucgacGACUGGUGCGa -3'
miRNA:   3'- uaGGCgg--GAGCUAGCU-------UUGACCGCGC- -5'
24831 5' -57 NC_005284.1 + 36782 0.69 0.443514
Target:  5'- -gUCGCCgUCGAcCGAcuuGACUGcGCGCGc -3'
miRNA:   3'- uaGGCGGgAGCUaGCU---UUGAC-CGCGC- -5'
24831 5' -57 NC_005284.1 + 5136 0.7 0.404884
Target:  5'- -aCCGCUcgCUCGAUCGAAccgucggaacgccGCUGacGCGCGa -3'
miRNA:   3'- uaGGCGG--GAGCUAGCUU-------------UGAC--CGCGC- -5'
24831 5' -57 NC_005284.1 + 47931 0.7 0.396692
Target:  5'- -gCCGCCCUccgagcacaCGAUCGAucgcgcgcgccAACUcGGUGCGa -3'
miRNA:   3'- uaGGCGGGA---------GCUAGCU-----------UUGA-CCGCGC- -5'
24831 5' -57 NC_005284.1 + 30970 0.7 0.359058
Target:  5'- -gCCGCCgUCGGcuggucggcguaguUCG-AACUGGCGCu -3'
miRNA:   3'- uaGGCGGgAGCU--------------AGCuUUGACCGCGc -5'
24831 5' -57 NC_005284.1 + 29714 0.71 0.333516
Target:  5'- gAUCCGUCCUUGAcaaucaccacgUCGggGCgccgaacagcaccGGCGCGa -3'
miRNA:   3'- -UAGGCGGGAGCU-----------AGCuuUGa------------CCGCGC- -5'
24831 5' -57 NC_005284.1 + 12766 0.72 0.305559
Target:  5'- -gCCGCgaucaucgauuuCCUCGAUCGGcauGCgGGCGCGg -3'
miRNA:   3'- uaGGCG------------GGAGCUAGCUu--UGaCCGCGC- -5'
24831 5' -57 NC_005284.1 + 42347 1.06 0.001088
Target:  5'- gAUCCGCCCUCGAUCGAAACUGGCGCGc -3'
miRNA:   3'- -UAGGCGGGAGCUAGCUUUGACCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.