Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24832 | 5' | -53.5 | NC_005284.1 | + | 14090 | 0.66 | 0.811465 |
|
Target: 5'- -aUUUCCCGgaacuGCUCGGCgAggggCCGgaGAUCg -3' miRNA: 3'- ggAAAGGGC-----CGAGCCGgUa---GGU--UUAG- -5' |
|||||||
| 24832 | 5' | -53.5 | NC_005284.1 | + | 32039 | 0.66 | 0.801845 |
|
Target: 5'- cCCUUgaucgaCCGcagccGCUCGGCCAUCUuc-UCg -3' miRNA: 3'- -GGAAag----GGC-----CGAGCCGGUAGGuuuAG- -5' |
|||||||
| 24832 | 5' | -53.5 | NC_005284.1 | + | 14653 | 0.66 | 0.782071 |
|
Target: 5'- -aUUUUCCGGC-CGGCaAUCCGAc-- -3' miRNA: 3'- ggAAAGGGCCGaGCCGgUAGGUUuag -5' |
|||||||
| 24832 | 5' | -53.5 | NC_005284.1 | + | 48085 | 0.67 | 0.740703 |
|
Target: 5'- -----gCCGGCcCGGUCAUCCGAGc- -3' miRNA: 3'- ggaaagGGCCGaGCCGGUAGGUUUag -5' |
|||||||
| 24832 | 5' | -53.5 | NC_005284.1 | + | 660 | 0.67 | 0.740703 |
|
Target: 5'- gCCag-CCCGGCUacCGGC--UCCGAGUUg -3' miRNA: 3'- -GGaaaGGGCCGA--GCCGguAGGUUUAG- -5' |
|||||||
| 24832 | 5' | -53.5 | NC_005284.1 | + | 42177 | 0.67 | 0.730051 |
|
Target: 5'- cCCUuccUUCUCGGaCUCGGUCucggCCcGGUCg -3' miRNA: 3'- -GGA---AAGGGCC-GAGCCGGua--GGuUUAG- -5' |
|||||||
| 24832 | 5' | -53.5 | NC_005284.1 | + | 15923 | 0.69 | 0.608803 |
|
Target: 5'- --aUUCCCGGCUuucCGGCguUCCugacGUCg -3' miRNA: 3'- ggaAAGGGCCGA---GCCGguAGGuu--UAG- -5' |
|||||||
| 24832 | 5' | -53.5 | NC_005284.1 | + | 54091 | 0.7 | 0.586622 |
|
Target: 5'- gCUUUC---GCUCGGCCGccUCCGGAUCg -3' miRNA: 3'- gGAAAGggcCGAGCCGGU--AGGUUUAG- -5' |
|||||||
| 24832 | 5' | -53.5 | NC_005284.1 | + | 41660 | 1.11 | 0.0012 |
|
Target: 5'- uCCUUUCCCGGCUCGGCCAUCCAAAUCc -3' miRNA: 3'- -GGAAAGGGCCGAGCCGGUAGGUUUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home