miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24833 5' -55 NC_005284.1 + 3160 0.65 0.720945
Target:  5'- aGCCGaGCAagcagacaGUCGAGCGCGAGGUu -3'
miRNA:   3'- -CGGCcCGUagaa----CGGUUCGUGUUCCA- -5'
24833 5' -55 NC_005284.1 + 16528 0.66 0.710078
Target:  5'- uGCCGGGCGcgCUgGC--GGCACcAGGa -3'
miRNA:   3'- -CGGCCCGUa-GAaCGguUCGUGuUCCa -5'
24833 5' -55 NC_005284.1 + 21751 0.66 0.699131
Target:  5'- -gCGGGCugcUCUUGCCGcuGGCACuGAGcGg -3'
miRNA:   3'- cgGCCCGu--AGAACGGU--UCGUG-UUC-Ca -5'
24833 5' -55 NC_005284.1 + 46559 0.66 0.699131
Target:  5'- uUCGGGCgAUCcgaugUUGCCGAGCAUGGcGGc -3'
miRNA:   3'- cGGCCCG-UAG-----AACGGUUCGUGUU-CCa -5'
24833 5' -55 NC_005284.1 + 9565 0.66 0.688118
Target:  5'- gGCgCaGGCAgcgCUcGCCaAAGCGCAGGGc -3'
miRNA:   3'- -CG-GcCCGUa--GAaCGG-UUCGUGUUCCa -5'
24833 5' -55 NC_005284.1 + 37429 0.66 0.662595
Target:  5'- gGCCGGGacguUAUCgcagccgGCCGcgaggaacaucgucGGCGCGAGGa -3'
miRNA:   3'- -CGGCCC----GUAGaa-----CGGU--------------UCGUGUUCCa -5'
24833 5' -55 NC_005284.1 + 32790 0.67 0.65479
Target:  5'- uGCCGGuGCGUCg-GCCu-GCGC-GGGUu -3'
miRNA:   3'- -CGGCC-CGUAGaaCGGuuCGUGuUCCA- -5'
24833 5' -55 NC_005284.1 + 9135 0.67 0.621267
Target:  5'- uGCCGGGUGUCgcggaUGCUAucGCGCGcGGc -3'
miRNA:   3'- -CGGCCCGUAGa----ACGGUu-CGUGUuCCa -5'
24833 5' -55 NC_005284.1 + 3724 0.68 0.58783
Target:  5'- gGCCGGGCGU--UGCCGguucuguggcAGCACGAc-- -3'
miRNA:   3'- -CGGCCCGUAgaACGGU----------UCGUGUUcca -5'
24833 5' -55 NC_005284.1 + 19967 0.68 0.58783
Target:  5'- uGCCGGGCuggCUUGUC---UACGGGGUu -3'
miRNA:   3'- -CGGCCCGua-GAACGGuucGUGUUCCA- -5'
24833 5' -55 NC_005284.1 + 16052 0.69 0.522211
Target:  5'- cGCCGGuaAUCgucgGCagUAAGCGCGGGGg -3'
miRNA:   3'- -CGGCCcgUAGaa--CG--GUUCGUGUUCCa -5'
24833 5' -55 NC_005284.1 + 46036 0.69 0.49045
Target:  5'- cGCCGGGCGUCgagcagGCCucgacggcAAGCGCuccGGc -3'
miRNA:   3'- -CGGCCCGUAGaa----CGG--------UUCGUGuu-CCa -5'
24833 5' -55 NC_005284.1 + 18839 0.7 0.459617
Target:  5'- gGCCGGGCGUgcaggggcaGCCGAGCACGGa-- -3'
miRNA:   3'- -CGGCCCGUAgaa------CGGUUCGUGUUcca -5'
24833 5' -55 NC_005284.1 + 9448 0.7 0.449569
Target:  5'- gGCCGGGCGgaUUGCCGuGUACuuuGGGc -3'
miRNA:   3'- -CGGCCCGUagAACGGUuCGUGu--UCCa -5'
24833 5' -55 NC_005284.1 + 2527 0.72 0.373869
Target:  5'- -aCGGGCGUUUgaacGCCAGGCgguauuacuaucACAGGGUg -3'
miRNA:   3'- cgGCCCGUAGAa---CGGUUCG------------UGUUCCA- -5'
24833 5' -55 NC_005284.1 + 15718 0.72 0.365032
Target:  5'- uGCaCGGGCGUC-UGUCGAcGCGCGcGGUg -3'
miRNA:   3'- -CG-GCCCGUAGaACGGUU-CGUGUuCCA- -5'
24833 5' -55 NC_005284.1 + 7906 0.73 0.307293
Target:  5'- cGCCGGGUucaAUC--GCC-GGCGCAAGGUc -3'
miRNA:   3'- -CGGCCCG---UAGaaCGGuUCGUGUUCCA- -5'
24833 5' -55 NC_005284.1 + 26237 0.74 0.277562
Target:  5'- aGUCGGGUcUCU--CCGAGCGCGAGGa -3'
miRNA:   3'- -CGGCCCGuAGAacGGUUCGUGUUCCa -5'
24833 5' -55 NC_005284.1 + 41367 1.1 0.000745
Target:  5'- aGCCGGGCAUCUUGCCAAGCACAAGGUg -3'
miRNA:   3'- -CGGCCCGUAGAACGGUUCGUGUUCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.