Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24834 | 5' | -60.3 | NC_005284.1 | + | 9162 | 0.66 | 0.427718 |
Target: 5'- cCUGCCCCGcGAagacucgcaccGCCCucguccGGCAGCg- -3' miRNA: 3'- aGACGGGGCuCU-----------UGGGcu----CCGUCGag -5' |
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24834 | 5' | -60.3 | NC_005284.1 | + | 25269 | 0.66 | 0.409317 |
Target: 5'- gUCcGCUCCGAGcgguuUCUGAGGC-GCUCu -3' miRNA: 3'- -AGaCGGGGCUCuu---GGGCUCCGuCGAG- -5' |
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24834 | 5' | -60.3 | NC_005284.1 | + | 14820 | 0.67 | 0.357184 |
Target: 5'- aUCUGCCaauGGGAGuaucgcggcCCCGAGuGCGGCUa -3' miRNA: 3'- -AGACGGgg-CUCUU---------GGGCUC-CGUCGAg -5' |
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24834 | 5' | -60.3 | NC_005284.1 | + | 5972 | 0.68 | 0.340874 |
Target: 5'- --aGCCacgcgucgaCGGGAACCagucGGGCAGCUCg -3' miRNA: 3'- agaCGGg--------GCUCUUGGgc--UCCGUCGAG- -5' |
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24834 | 5' | -60.3 | NC_005284.1 | + | 11771 | 0.71 | 0.191357 |
Target: 5'- cUCUGCCgCGAGAAuCCCGAGauccuuuGCaauaaGGCUCa -3' miRNA: 3'- -AGACGGgGCUCUU-GGGCUC-------CG-----UCGAG- -5' |
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24834 | 5' | -60.3 | NC_005284.1 | + | 13806 | 0.72 | 0.182038 |
Target: 5'- gCUGCCUCGGGuuCUCGGGGCAGaaCa -3' miRNA: 3'- aGACGGGGCUCuuGGGCUCCGUCgaG- -5' |
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24834 | 5' | -60.3 | NC_005284.1 | + | 54245 | 0.74 | 0.128458 |
Target: 5'- aUUGCCuuGAGGGCuuG-GGCGGCUUg -3' miRNA: 3'- aGACGGggCUCUUGggCuCCGUCGAG- -5' |
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24834 | 5' | -60.3 | NC_005284.1 | + | 40982 | 1.1 | 0.000251 |
Target: 5'- uUCUGCCCCGAGAACCCGAGGCAGCUCa -3' miRNA: 3'- -AGACGGGGCUCUUGGGCUCCGUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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