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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24835 | 5' | -54.1 | NC_005284.1 | + | 44737 | 0.68 | 0.55419 |
Target: 5'- aGCGUGUGUCgCcuGUGGAAa-GCGGCGUa -3' miRNA: 3'- aCGUACACAG-G--UACCUUcgCGUCGUA- -5' |
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24835 | 5' | -54.1 | NC_005284.1 | + | 17346 | 0.71 | 0.39223 |
Target: 5'- cGCGUuacugcgacgaacucGUGUCCGacgGGAAGgGCGGCAa -3' miRNA: 3'- aCGUA---------------CACAGGUa--CCUUCgCGUCGUa -5' |
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24835 | 5' | -54.1 | NC_005284.1 | + | 40374 | 1.06 | 0.001398 |
Target: 5'- cUGCAUGUGUCCAUGGAAGCGCAGCAUg -3' miRNA: 3'- -ACGUACACAGGUACCUUCGCGUCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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