miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24836 3' -53.5 NC_005284.1 + 836 0.7 0.556908
Target:  5'- aCAAGCGCAcCgGCA-AGCGCCGGu-- -3'
miRNA:   3'- gGUUCGCGUuG-CGUgUCGCGGCUuua -5'
24836 3' -53.5 NC_005284.1 + 48063 0.71 0.471216
Target:  5'- gCCGGuGCGCuGCGCAUuacGCGCCGGc-- -3'
miRNA:   3'- -GGUU-CGCGuUGCGUGu--CGCGGCUuua -5'
24836 3' -53.5 NC_005284.1 + 29857 0.71 0.513331
Target:  5'- gUCAAGC-CGACGCAUcucgcgauggucGGCGCCGGc-- -3'
miRNA:   3'- -GGUUCGcGUUGCGUG------------UCGCGGCUuua -5'
24836 3' -53.5 NC_005284.1 + 50176 0.71 0.513331
Target:  5'- ---uGCGCAACGCGauCGGCGCCa---- -3'
miRNA:   3'- gguuCGCGUUGCGU--GUCGCGGcuuua -5'
24836 3' -53.5 NC_005284.1 + 7700 0.7 0.524105
Target:  5'- gCGuGCGCGugaGCGguGCGCCGAAGc -3'
miRNA:   3'- gGUuCGCGUug-CGUguCGCGGCUUUa -5'
24836 3' -53.5 NC_005284.1 + 38724 0.7 0.534964
Target:  5'- cUCAAuGCGC--UGCAUGGCGCCGGAc- -3'
miRNA:   3'- -GGUU-CGCGuuGCGUGUCGCGGCUUua -5'
24836 3' -53.5 NC_005284.1 + 46577 0.7 0.534964
Target:  5'- gCCGAGCaugGCGGCGCAguGggcaaCGCCGAAc- -3'
miRNA:   3'- -GGUUCG---CGUUGCGUguC-----GCGGCUUua -5'
24836 3' -53.5 NC_005284.1 + 32703 0.7 0.5459
Target:  5'- gCCAAGCGCuuuuccguCGCGCAGUccgGCCGc--- -3'
miRNA:   3'- -GGUUCGCGuu------GCGUGUCG---CGGCuuua -5'
24836 3' -53.5 NC_005284.1 + 16677 0.7 0.556908
Target:  5'- gUCGAGCGUGAgGC-CGGCGUCGGc-- -3'
miRNA:   3'- -GGUUCGCGUUgCGuGUCGCGGCUuua -5'
24836 3' -53.5 NC_005284.1 + 32125 0.71 0.471216
Target:  5'- uCCAGGCGC-ACGCuGCuGCGCgCGAu-- -3'
miRNA:   3'- -GGUUCGCGuUGCG-UGuCGCG-GCUuua -5'
24836 3' -53.5 NC_005284.1 + 45073 0.71 0.468127
Target:  5'- gCGAGCGCGgcuACGCGCucgugaaguugccgAGCGCCGuuGa -3'
miRNA:   3'- gGUUCGCGU---UGCGUG--------------UCGCGGCuuUa -5'
24836 3' -53.5 NC_005284.1 + 23271 0.72 0.450823
Target:  5'- ---cGCGUuuaaGGCGCGCGGUGCCGAu-- -3'
miRNA:   3'- gguuCGCG----UUGCGUGUCGCGGCUuua -5'
24836 3' -53.5 NC_005284.1 + 10071 0.77 0.21861
Target:  5'- gCGAGCGgAACGCGCGGCGaCCGcGAc -3'
miRNA:   3'- gGUUCGCgUUGCGUGUCGC-GGCuUUa -5'
24836 3' -53.5 NC_005284.1 + 17895 0.74 0.348181
Target:  5'- gCGGGCGCAucCGCGCAGCgGCUGGc-- -3'
miRNA:   3'- gGUUCGCGUu-GCGUGUCG-CGGCUuua -5'
24836 3' -53.5 NC_005284.1 + 6585 0.74 0.356796
Target:  5'- aCgAGGCGCGuaaGCGC-GCGCCGAAGa -3'
miRNA:   3'- -GgUUCGCGUug-CGUGuCGCGGCUUUa -5'
24836 3' -53.5 NC_005284.1 + 17740 0.73 0.373571
Target:  5'- gCAGGCGCAgGCGCACcggcucgGGCGCUGGc-- -3'
miRNA:   3'- gGUUCGCGU-UGCGUG-------UCGCGGCUuua -5'
24836 3' -53.5 NC_005284.1 + 49378 0.73 0.374469
Target:  5'- gCCGAGCGCGagcugGCGCGCcgcacgggcaAGCaGCCGAAc- -3'
miRNA:   3'- -GGUUCGCGU-----UGCGUG----------UCG-CGGCUUua -5'
24836 3' -53.5 NC_005284.1 + 30880 0.73 0.383525
Target:  5'- --cAGCGCAcugguCGCGCAGCGaCCGAGc- -3'
miRNA:   3'- gguUCGCGUu----GCGUGUCGC-GGCUUua -5'
24836 3' -53.5 NC_005284.1 + 11610 0.72 0.430925
Target:  5'- gCCGAGCGUcagcguGACGUGCAGCG-CGAAc- -3'
miRNA:   3'- -GGUUCGCG------UUGCGUGUCGCgGCUUua -5'
24836 3' -53.5 NC_005284.1 + 16027 0.72 0.450823
Target:  5'- gUCGGGCGCGACGagaucCGCAuuGCGCCGGu-- -3'
miRNA:   3'- -GGUUCGCGUUGC-----GUGU--CGCGGCUuua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.