miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24836 5' -59.8 NC_005284.1 + 33222 0.66 0.506049
Target:  5'- ---cGUCGaaCGCCCGCgcGGCcugcucGUCGGCa -3'
miRNA:   3'- acuaCAGCggGUGGGCG--UCG------CAGCCG- -5'
24836 5' -59.8 NC_005284.1 + 32986 0.66 0.506049
Target:  5'- gGcgGUCaCUCGCuCCGCAGCG--GGCg -3'
miRNA:   3'- aCuaCAGcGGGUG-GGCGUCGCagCCG- -5'
24836 5' -59.8 NC_005284.1 + 43601 0.66 0.506049
Target:  5'- ---cGUCGaaggcuugcuuUCCGCgCGCGGCGgccgCGGCg -3'
miRNA:   3'- acuaCAGC-----------GGGUGgGCGUCGCa---GCCG- -5'
24836 5' -59.8 NC_005284.1 + 25033 0.66 0.496001
Target:  5'- aGAUGcguauccCGCUCGCgCCGguGCuguUCGGCg -3'
miRNA:   3'- aCUACa------GCGGGUG-GGCguCGc--AGCCG- -5'
24836 5' -59.8 NC_005284.1 + 442 0.66 0.496001
Target:  5'- cUGggGcUCGaCCCggcgaGCCgGCAGCGccuggUCGGCg -3'
miRNA:   3'- -ACuaC-AGC-GGG-----UGGgCGUCGC-----AGCCG- -5'
24836 5' -59.8 NC_005284.1 + 9235 0.66 0.486044
Target:  5'- cGAgg-CGCUgaCGCgCGCGGCGggCGGCa -3'
miRNA:   3'- aCUacaGCGG--GUGgGCGUCGCa-GCCG- -5'
24836 5' -59.8 NC_005284.1 + 43766 0.66 0.475203
Target:  5'- cGAUGUugguucuUGCCCcCgCUGCGGCuuucgcauccuuGUCGGCa -3'
miRNA:   3'- aCUACA-------GCGGGuG-GGCGUCG------------CAGCCG- -5'
24836 5' -59.8 NC_005284.1 + 53534 0.66 0.470315
Target:  5'- cGAUGUU-CgCGCCCGCAGuCGUgaugaugaacaugagCGGCu -3'
miRNA:   3'- aCUACAGcGgGUGGGCGUC-GCA---------------GCCG- -5'
24836 5' -59.8 NC_005284.1 + 46023 0.66 0.466423
Target:  5'- cUGAUGcaCGCCgaACgCCGCuGCGgCGGCu -3'
miRNA:   3'- -ACUACa-GCGGg-UG-GGCGuCGCaGCCG- -5'
24836 5' -59.8 NC_005284.1 + 24710 0.66 0.463515
Target:  5'- -cAUGUCGCCgaagggcgaaacgaCGCCCGU-GCGucuUCGGCc -3'
miRNA:   3'- acUACAGCGG--------------GUGGGCGuCGC---AGCCG- -5'
24836 5' -59.8 NC_005284.1 + 10040 0.66 0.463515
Target:  5'- gUGAUGUCGCgCUugCCacgcaggcucgugaGCgAGCGgaacgcgCGGCg -3'
miRNA:   3'- -ACUACAGCG-GGugGG--------------CG-UCGCa------GCCG- -5'
24836 5' -59.8 NC_005284.1 + 39179 0.66 0.455808
Target:  5'- ---cGUCGCCgACCUGCAaCGUcacgucgCGGCc -3'
miRNA:   3'- acuaCAGCGGgUGGGCGUcGCA-------GCCG- -5'
24836 5' -59.8 NC_005284.1 + 35236 0.67 0.437785
Target:  5'- cGGUGUCGUagaucucgagcagCACCCaaccuucgccaucggGUGGUGUCGGCg -3'
miRNA:   3'- aCUACAGCGg------------GUGGG---------------CGUCGCAGCCG- -5'
24836 5' -59.8 NC_005284.1 + 9139 0.67 0.437785
Target:  5'- gGGUGUCGCggaugcuaUCGCgCGCGGCaUgGGCa -3'
miRNA:   3'- aCUACAGCG--------GGUGgGCGUCGcAgCCG- -5'
24836 5' -59.8 NC_005284.1 + 13677 0.67 0.410181
Target:  5'- cGAUGaCGCUugaCACaCCGCAGUacGUCGGg -3'
miRNA:   3'- aCUACaGCGG---GUG-GGCGUCG--CAGCCg -5'
24836 5' -59.8 NC_005284.1 + 44114 0.67 0.410181
Target:  5'- -cGUGUCGaUCgCGCCCGCGGCGcgcaccaguuccUCGcGCa -3'
miRNA:   3'- acUACAGC-GG-GUGGGCGUCGC------------AGC-CG- -5'
24836 5' -59.8 NC_005284.1 + 20815 0.67 0.401223
Target:  5'- --cUGUCgagcaGCCCGCa-GCAGCGcCGGCc -3'
miRNA:   3'- acuACAG-----CGGGUGggCGUCGCaGCCG- -5'
24836 5' -59.8 NC_005284.1 + 32985 0.67 0.401223
Target:  5'- cGccGUCGCCaccggcuGCCgUGCAGUGUCGGa -3'
miRNA:   3'- aCuaCAGCGGg------UGG-GCGUCGCAGCCg -5'
24836 5' -59.8 NC_005284.1 + 8205 0.68 0.383686
Target:  5'- cGgcGUUGCCCACugcgCCGCcauGC-UCGGCa -3'
miRNA:   3'- aCuaCAGCGGGUG----GGCGu--CGcAGCCG- -5'
24836 5' -59.8 NC_005284.1 + 45763 0.68 0.366665
Target:  5'- aUGGUGUgGCUCuucauuCCaucgaacuuugCGCAgGCGUCGGCa -3'
miRNA:   3'- -ACUACAgCGGGu-----GG-----------GCGU-CGCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.