miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24837 3' -48.4 NC_005284.1 + 9654 0.66 0.969507
Target:  5'- ---cCACGCCuuGcccaucagcUCGACGaUCGCAGc -3'
miRNA:   3'- auaaGUGCGGuuU---------AGCUGCaAGCGUU- -5'
24837 3' -48.4 NC_005284.1 + 14632 0.66 0.969507
Target:  5'- gGUUCGCgagauaGCCGGAUUGuCGUUCGgAGg -3'
miRNA:   3'- aUAAGUG------CGGUUUAGCuGCAAGCgUU- -5'
24837 3' -48.4 NC_005284.1 + 31306 0.66 0.96215
Target:  5'- ---cCACGCCGGAUCGACaGUgUUGuCGAa -3'
miRNA:   3'- auaaGUGCGGUUUAGCUG-CA-AGC-GUU- -5'
24837 3' -48.4 NC_005284.1 + 17489 0.66 0.96215
Target:  5'- ----gGCGCCGGGUCGGUGgUCGCGu -3'
miRNA:   3'- auaagUGCGGUUUAGCUGCaAGCGUu -5'
24837 3' -48.4 NC_005284.1 + 13529 0.66 0.96215
Target:  5'- -uUUCGCGUCAA--CGACGagguagUCGCAGu -3'
miRNA:   3'- auAAGUGCGGUUuaGCUGCa-----AGCGUU- -5'
24837 3' -48.4 NC_005284.1 + 49464 0.66 0.958044
Target:  5'- -cUUCACGCCGGuaaCGACGgcgaagCGCu- -3'
miRNA:   3'- auAAGUGCGGUUua-GCUGCaa----GCGuu -5'
24837 3' -48.4 NC_005284.1 + 13202 0.66 0.958044
Target:  5'- --cUCGCGCgCGuacGUUGAUGUUUGCAu -3'
miRNA:   3'- auaAGUGCG-GUu--UAGCUGCAAGCGUu -5'
24837 3' -48.4 NC_005284.1 + 28641 0.66 0.958044
Target:  5'- ---cCACGCUuucaGGAUCG-UGUUCGCAGc -3'
miRNA:   3'- auaaGUGCGG----UUUAGCuGCAAGCGUU- -5'
24837 3' -48.4 NC_005284.1 + 4575 0.66 0.953643
Target:  5'- ---gCGCGCgCAAAUCagugcGCGUUCGCGu -3'
miRNA:   3'- auaaGUGCG-GUUUAGc----UGCAAGCGUu -5'
24837 3' -48.4 NC_005284.1 + 8841 0.66 0.953643
Target:  5'- --gUCACGCgugacCAGAUCGAU-UUCGCGAu -3'
miRNA:   3'- auaAGUGCG-----GUUUAGCUGcAAGCGUU- -5'
24837 3' -48.4 NC_005284.1 + 52126 0.66 0.953643
Target:  5'- ---gCAaGCCAGA-CGAUGUUCGCGc -3'
miRNA:   3'- auaaGUgCGGUUUaGCUGCAAGCGUu -5'
24837 3' -48.4 NC_005284.1 + 16985 0.67 0.948941
Target:  5'- --aUCACGCCGAAcgcgcacacggCGACGaUCGCc- -3'
miRNA:   3'- auaAGUGCGGUUUa----------GCUGCaAGCGuu -5'
24837 3' -48.4 NC_005284.1 + 6240 0.67 0.943933
Target:  5'- ---aCACGCCAGugugugggCGAaCGUUCGCu- -3'
miRNA:   3'- auaaGUGCGGUUua------GCU-GCAAGCGuu -5'
24837 3' -48.4 NC_005284.1 + 18683 0.67 0.943933
Target:  5'- ---gCACGCCGAAUCG-CGacgaCGCGAc -3'
miRNA:   3'- auaaGUGCGGUUUAGCuGCaa--GCGUU- -5'
24837 3' -48.4 NC_005284.1 + 46077 0.67 0.938614
Target:  5'- ---gCGCGCCGcGUCGAgCGcgCGCAc -3'
miRNA:   3'- auaaGUGCGGUuUAGCU-GCaaGCGUu -5'
24837 3' -48.4 NC_005284.1 + 4613 0.67 0.932983
Target:  5'- cAUUgGCGCC-GAUCG-CGUUgCGCAAc -3'
miRNA:   3'- aUAAgUGCGGuUUAGCuGCAA-GCGUU- -5'
24837 3' -48.4 NC_005284.1 + 36300 0.67 0.932402
Target:  5'- --gUCACGCCGAGcgcguucUCGGCGcgcacccgCGCGAg -3'
miRNA:   3'- auaAGUGCGGUUU-------AGCUGCaa------GCGUU- -5'
24837 3' -48.4 NC_005284.1 + 48806 0.67 0.927036
Target:  5'- ---cCGC-CCGAAUCGcauCGUUCGCGAc -3'
miRNA:   3'- auaaGUGcGGUUUAGCu--GCAAGCGUU- -5'
24837 3' -48.4 NC_005284.1 + 578 0.68 0.914196
Target:  5'- aGUUCGCGCgAGA-CGuCGUUCGUg- -3'
miRNA:   3'- aUAAGUGCGgUUUaGCuGCAAGCGuu -5'
24837 3' -48.4 NC_005284.1 + 44442 0.68 0.914196
Target:  5'- gAUUCGCGUgAucUCGACGccgcUUCGCAc -3'
miRNA:   3'- aUAAGUGCGgUuuAGCUGC----AAGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.